Peromyscus maniculatus bairdii (prairie deer mouse): 102910944
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Entry
102910944 CDS
T11302
Symbol
Col6a5
Name
(RefSeq) collagen alpha-5(VI) chain
KO
K06238
collagen type VI alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
pmav05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102910944 (Col6a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102910944 (Col6a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102910944 (Col6a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102910944 (Col6a5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102910944 (Col6a5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102910944 (Col6a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmav04147
]
102910944 (Col6a5)
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102910944 (Col6a5)
Exosome [BR:
pmav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102910944 (Col6a5)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102910944 (Col6a5)
Hyaluronan
Extracellular matrix or blood plasma proteins
102910944 (Col6a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102910944
NCBI-ProteinID:
XP_042137486
Ensembl:
ENSPEMG00000023705
LinkDB
All DBs
Position
7:complement(103810441..103933226)
Genome browser
AA seq
2645 aa
AA seq
DB search
MKLQLIAFVLILWTETLADQSPGPGPEYADVVFLVDSSDDLGIKSFPFVRTFLNKLISSL
PIEADKYRVALAQYSDALYNEFQLGTFKNRNPMLNHLKKNFGFIGGSLKIGNALREAHRT
YFSASTNGRDKKQFPPILVVLASAESEDDVEEASKALWEDGVKVISVGVKKASEENLKAM
ATAQFHFNLRTVRDLSLFAPNMTQIIKDVTKYREGTAVALITPEAPTTPAAPATAAAPAT
PEAPATPEAPATAATNADQTVPFPISCQKDSLADIIFLVDESVGTTENLRDLQNFLENVT
SSVDVKDNCMRLGLMSYSDKVQTISSLKSSTNQSEFQQQIRKLSLRTGGSKVGAAIEQMR
REGFSESGGSRKAQGVPQIAVLVTNRPSDDAVRDAALDLRLDGVTMFALGVQGANNTQLE
DIVSYPSEQSISTHSSYRQLESYSRNFLKKIHNEVWTQVSTHAEQMELDKTGCVDTKEAD
IYFLIDGSTSIRKREFEQIQTFMSSVVDMFPIGPNKVRVGVVQYSHKNEVEFPISLYLDA
IALKKAIFNIKQLKGRTLTGKALDFILPIIKTGKSERTDEIPCYLIVLTDGKSEDSVLEP
ADRLRAERVTIHAVGIGEANRTQLQQIAGNDDRVNFGQNFDSLKNIKNEIVHRICSEKGC
EDMKADIMFLVDSSGSIGPTNFEKMKTFMKNLVEKIQIGANKTQVGVVQFSDYNREEFQL
NTFFTHKEIYAAIDRMSPINRNTLTGSALTFVKDYFDLAKGGRPQVRKFLILLTDGEAQD
KVGGPAMALRNKSVTIFSVGVYGANRAELEEISGDGSLVFHVENFDHLEAIESKLVFRVC
ALHDCKRIELLDIVFVLDHSGSIGPQEQESMINLTIHLVKKADVGRDRVQFGALKYSNNP
EILFYLNTYSSKSGIIEHLRRTRDTGGDTYTAKALEHSNILFTEEHGSRLKQNVRQLMIV
ITDGVSHDRHKLNDTVWRLRDKGITIFAVGVGNANQDELETMAGKKENTIHVDNFDKLRD
IYLPLQETLCNNSQETCNLQEADVIFLCDGSDMVSDSEFVTMTTFLSDLIDNFDIQSQRM
KIGMAQYGSRYQEIIELESSLNKTQWKSRIQTMAKSKGFPRIDFALKHVSHMFHPSVGGR
KNAGVPQMLVVITSGYPRYDVADAVKVLKDLGICVLALGIGDVYKEQLLPITGNPEKIIT
FQDFNRLMSVDVKKRMVREICQSCGKANCFVDVVIGFDISTHHEGQPLFQGHPRLESYLP
NILEDITSIRGVSCGAGAEAQVSLAFKVNNDQEFPAKFQIYQKAVFDNLLQATVRGPTHL
NAQLLQSLWDVFEEKSASRGQVMLIFSDGLQGESITTLEQQSDRLREAGLDALLVVSLNA
LAQDEFSSFEFGKGFDYRTHLTIGMTDLGKKLSQYLGNIAERACCCTFCKCPGIPGPHGT
RGLQASKGSSGLKGGRGYRGEDGDPGRRGEIGPQGDRGIIGCPGTRGQKGVKGFAGAQGE
HGEHGLDGLDGEDGFYGLRGVKGEKGDLGSQGSPGSRGAPGEDGEKGFPGDPGNPGRDST
IKGQKGHRGDRGTQGRTGWKGTQGGPSSRGSRGMEGRRGLRGPSGEAGNPGPQGAQGPEG
LQGPQGSSGNPGEKGEKGGQGHQGPQGAPGPAGSRGSIGRPGLWGRKGEPGVPGGPGPVG
PPGQRGERGDHGIPGYGQMGRKGVKGPTGFPGDPGQKGDAGDPGIPGGPGPKGFKGLTLS
QGLKGESGLQGSQGPPGRRGPKGTAGHPIYSPCDLMQFLRNHSSCWKEKCPVYPTELVFA
LDQSSGITERRFNETRDIITSIVRDLNIRENNCPVGARVAVVSYDSGTSYLIRRSDYRSK
KHLLQLLSQIKYQVPQKARDIGNAMRFVARNVFKRTSSGTNVRRVAVFFSNGQSASRGAI
LTATMEFSALDISLAVFAYNERVFLDDAFGFDDTGTFQVIPVPPVGNYEPLERLRRCTLC
YDKCFPNTCAEETSFPENSYMDVAFLLDNSHNIANDDFQAMKALVSSAIDGFHITSNPST
SGPGDRIALLSYSPSESSRKKSRVKTEFEFTTYDHQSIMKDYIHTSLQQLNGDATIGLGL
QWAMEGLFPGTPNPRKHKVIIVISAGENHEEKEFVKTVALRAKCQGYVIFVVSLGSTQTD
EMEQLASYPHDHHLIQLGRMHKPDLNYIVKFLKPFVYFVRRGFNQYPPPTLEGDCRRLGV
ERGDVLRSSLRLTTELHEVSPSENSLLGQELSAGKDSSFMLEDDGGDHLVYIPNQMLEPH
MLVTHYGDDHGSEAMASLTSEHNNHGRKELGLADEPEDASLQEYYMDVAFLIDASQRVGN
DLFKEVRALITSVLDYFYIAPDPLTSVLGDRVAVLTYSPPGYLPNSEECPVYLEFDLVTY
HSVHQMKHHLQESLKQLNGDVFIGHALQWTIDNVFVGTPNLRKNKVIFIISAGETSSLDK
EVLRNASLRAKCQGYSIFVFSFGPVHNDMELEELASQPLDHHLVQLGRIHKPDLDYIIKF
VKPFVHSIRRAINKYPTRELQAKCANATFPSTEKAGTEDSLFLIPEVYKIEAGDSELFGD
SHPQEQHFFVLGDNHSNDSGITADLIQKLYALFSSGELMVNDKEEPHLEEAAAPANDKQD
GEDAR
NT seq
7938 nt
NT seq
+upstream
nt +downstream
nt
atgaagctccagctaattgcatttgtcctaatcctttggactgaaacgctggcagatcag
agcccagggccaggccccgagtatgcagatgtggtgtttctggtggacagctctgatgac
ctggggattaagtccttcccatttgtgagaactttcctcaacaagctgatcagcagcctc
cccatcgaggccgacaagtaccgtgtggccctggcccagtacagcgatgctctctacaac
gagttccagctgggcaccttcaagaacaggaaccccatgctgaaccacctgaagaagaac
tttgggttcatcggtgggtccctgaagatagggaacgccctgcgagaggctcacaggacc
tatttctctgcatccacaaatggaagagacaagaaacagttccccccaatcctggtggtg
ctggcttcagccgagtctgaggatgatgtggaagaggcttcgaaagccctgtgggaagat
ggggtgaaagtcatctcggtgggggtgaagaaggcttctgaggaaaacctgaaggccatg
gccacagcccagttccacttcaacctcaggactgtcagagacctcagtttgtttgcccca
aacatgacgcagattatcaaggacgtgactaagtacagggaaggaacagctgtggccctt
atcacacctgaagccccaactacacctgcagctccagccacagctgcagccccagccaca
cctgaagccccagccacacctgaagccccagccacagctgcaaccaatgctgatcagaca
gttccctttcccatatcctgtcagaaagactccctggctgacattatattcttggtggac
gagtcagtggggaccacagaaaatctgagggacctgcagaacttcctggagaatgtcacc
agctctgtggatgtgaaggacaattgcatgcgacttggactgatgagctacagtgacaag
gttcagactatttcttccctgaagtcgagtaccaaccagtctgaattccagcagcaaatc
cgaaaactctccctccggactgggggctctaaagttggggctgccattgagcagatgaga
agagaaggcttctccgagtctggtggcagcagaaaggcacagggggtccctcagattgct
gtgctggtcaccaacagaccatcagatgatgccgtgagggatgctgcactcgaccttcgc
ttggatggtgttactatgtttgctctgggcgtccaaggggccaacaacacacagttagaa
gacatagtatcctacccttctgagcagagcatttccacacacagctcctacagacagctg
gaatcgtacagtaggaacttcctgaagaagatccacaatgaagtctggacccaagtttcc
acccatgctgaacaaatggaacttgataaaactggctgtgtggacacaaaggaggctgac
atctatttcctcattgatggctcgaccagcatccgcaagagagagtttgagcaaatccag
acatttatgtcgtctgtggtagacatgtttcccatcggtcccaacaaagtccgagttggc
gtcgtgcagtattcacataagaatgaagtggaattccccatctctctctacttggatgcc
attgccttgaagaaggctattttcaacatcaagcaactcaaaggccgtaccctcactggg
aaagctctggatttcatactgccgataatcaagacggggaaatcggagaggacggatgaa
attccctgttacctcattgtactgactgacgggaagtcagaagacagcgttctagaacct
gcggacagactcagggctgaacgcgtcaccattcacgcggtggggattggcgaggcgaac
agaacccagctgcaacaaattgctggcaatgacgatagggttaattttgggcagaatttt
gattctctaaagaacataaaaaatgaaattgttcacagaatctgctccgaaaaaggatgt
gaagacatgaaggctgacatcatgtttttagtggacagttctggaagcatagggcctaca
aattttgagaaaatgaaaaccttcatgaaaaacctggtggagaagattcaaattggtgcc
aataaaacccaagtgggtgttgttcagttcagtgattataacagggaagaattccagctt
aatacattcttcacacacaaagaaatttatgccgcgatagacaggatgtcgcccatcaac
agaaacactttgactggaagtgcgcttacctttgtaaaggactactttgaccttgccaag
gggggccgtccccaggtcagaaagtttctcatcctcctcacagacggagaagcccaagat
aaagtagggggtcccgccatggctctcaggaacaaaagtgtgaccatcttttctgtgggt
gtgtacggtgccaatagggctgagctggaggaaatcagtggggatggcagcctggttttc
catgttgagaactttgatcatctggaggcgatagagagtaagctcgtgttccgtgtgtgc
gctctacatgattgcaagaggatcgaactcttagacattgtgttcgtgctggaccattca
ggcagcatcggaccacaagaacaagaaagcatgattaacctcaccatccacttggtgaag
aaggcggatgttggcagggaccgagtccagtttggagctctcaaatattccaacaatcct
gagatccttttctatcttaacacatactcgagcaaatcgggcatcattgagcacctgagg
aggaccagggacacaggaggggacacctacactgccaaggctctggagcactccaacatc
ctgttcacagaggagcatggcagccgcctgaagcaaaacgtgagacagctgatgattgtc
atcacggacggtgtgtcccacgatcgacataaactcaacgacacagtgtggagactaagg
gacaaaggcatcaccatcttcgcagtaggtgtaggaaatgccaaccaagatgaactggag
accatggcagggaagaaagaaaatactatccatgtagacaactttgacaagctgagagat
atttacctgcctctgcaagaaactctgtgcaataattcacaagagacctgtaaccttcag
gaagcagatgtgattttcctttgtgatggctctgacatggtgtctgattcggagtttgtt
accatgacaactttcttgtcagacttaattgataattttgacattcagtctcagagaatg
aaaatcgggatggctcaatacgggagccggtaccaggaaatcattgagttggagagctct
ctgaacaagactcagtggaagtctcgcatccaaaccatggccaagagcaaggggtttcca
cgaattgacttcgctcttaagcatgtgagccacatgtttcatccctccgtcggcgggagg
aagaatgctggtgtccctcaaatgttggttgtcatcacctctggttatcctcgctatgat
gtggcagatgcagttaaagtcctgaaagaccttggcatctgtgtcctggctttgggaata
ggagatgtttataaggaacaacttctgcccatcacaggcaatccagaaaaaatcattact
ttccaagactttaatagactgatgagtgtggatgtgaagaaaagaatggtccgtgaaatc
tgccagagctgcgggaaagccaattgctttgtggacgtagtgatcgggtttgacatttcc
acccaccatgagggccagcctttgttccagggccatccccgcttagaatcatacctccca
aacatcttagaggacatcacctctatcagaggggtgagctgtggagcaggtgcagaggca
caggtgagcctggcctttaaggtgaacaatgaccaagagttccccgccaagttccaaatc
taccagaaagcagtgtttgacaacttgctgcaagccaccgtccgtgggccaactcacctg
aacgcacagctcttgcagtcactgtgggacgtgtttgaggagaaatctgcatccaggggc
caggtgatgcttatcttctcagatggtctccagggcgagagcatcaccacgctggaacaa
cagtcagacaggctcagagaagcaggacttgatgctctgttggtggtgtcccttaatgca
ttagctcaggatgagttttccagctttgaatttggaaaaggatttgactacaggactcac
ctgaccattggaatgacagacctgggcaagaagctttcacagtatctgggaaacatcgca
gagagggcttgttgctgcacattttgcaaatgtccggggattccaggacctcatggaacc
cggggactccaagcctcaaagggttcttcaggcctgaaaggaggcagaggatacagagga
gaggatggagaccctggaagacgaggagaaattggacctcaaggagatagagggatcatc
gggtgtccggggactcgaggccagaagggagtgaaaggatttgctggagctcagggagaa
cacggagaacatgggcttgatggactggatggagaagatggattttatggacttcgtggg
gtgaagggagaaaaaggtgaccttggctctcagggcagcccaggttccagaggtgcccct
ggagaagatggagagaagggcttcccaggggatcccggtaacccaggacgagacagcacc
atcaaaggccagaagggccacagaggagatcgaggaacacaagggagaactgggtggaag
gggacacaaggtggtcctagctccagaggaagcaggggaatggaaggtcggaggggactc
cggggtccctcgggggaagcaggaaacccggggcctcaaggtgcacagggaccagaagga
ctgcaaggcccacaggggtccagtggaaatcctggcgagaaaggagaaaaaggaggtcaa
gggcaccagggacctcagggtgctcctgggccagcaggatctagggggagcattggaaga
cctgggctttgggggagaaagggggaacctggagttcctggaggcccaggaccagtagga
ccccctgggcagcgaggagaacggggagatcatggcatcccaggctatggccagatggga
agaaaaggagttaagggcccaacaggattccctggggacccagggcagaagggtgatgct
ggagatcctggaattcctggggggcctggacccaaaggattcaagggactgactctctct
caaggcttgaaaggcgagagtgggcttcaggggtctcaaggcccccccggacggagaggt
cctaaaggcacagcagggcatcccatatattccccctgtgatctgatgcagttcctgcgg
aaccatagttcctgctggaaagaaaagtgtcccgtgtatccaacagagctggtatttgcc
ctggaccagtcctctggtatcacagaaaggagattcaatgaaacaagagacatcatcact
tccattgtcagggacctcaacatcagggaaaataactgtcctgtaggagcgagggttgcc
gtggtttcctatgactcaggtaccagttacctcatccgtaggtctgactaccggagcaag
aaacatctccttcagctcctttcccagataaaataccaagtcccccagaaggccagggac
attggcaacgcaatgaggtttgtggcccgcaatgttttcaagcggacatcttcgggaacc
aatgtcaggagagttgcagtgttcttcagcaatggccagtcagccagtagaggggccatc
ctcacggccaccatggagttcagtgccctggacatcagccttgcagtctttgcttataac
gaaagagttttccttgatgatgcttttgggtttgatgacactgggacatttcaagtgatt
ccggttcctccggttgggaattatgagcctctggaaaggcttcggcgctgcacactttgc
tatgacaagtgttttccaaatacttgtgcagaagagacttcctttcctgaaaattcatac
atggatgtagcattcctcttagacaattcccataatatagccaatgacgacttccaagcc
atgaaagctttggtgagctcagcgatcgatggcttccacatcacttcaaacccttcaacc
tcgggccctggtgacagaattgctttgctgagctattctccctcagagagttccagaaag
aagagcagggtgaagacagagtttgagtttacaacctacgaccaccaatccatcatgaag
gactacatccacacttccctccaacaactaaatggagatgccaccattggtcttggccta
cagtgggccatggagggtctcttcccaggaacccccaatccaagaaaacacaaggttatc
attgtgatttcagctggagagaatcatgaggagaaggaatttgtgaagactgtggctttg
agggccaaatgtcaaggctatgtcatatttgtggtttctctgggctccacacaaacagat
gagatggaacaattagccagctacccacatgatcaccatctgatacagcttgggagaatg
cacaagccagatctgaattatattgtaaagtttctgaagccatttgtatactttgtcaga
cgtggattcaatcagtacccaccgccgacgctggagggtgactgcaggcgtctcggtgta
gagaggggagatgtactgcgcagcagcctccgattgactactgagttgcatgaggtttct
ccaagcgagaacagccttcttggccaagagctgagtgctgggaaagactcatcttttatg
ttggaggatgatggaggtgaccatttggtttatattccaaaccaaatgctagagccacat
atgctagtcactcactatggagacgatcatggatctgaagcaatggcaagtctcacttcc
gaacataataatcatggcagaaaagaactgggtcttgctgatgaacctgaggatgcttct
cttcaagaatattacatggatgtggctttcctcatagatgcttctcagagagtaggaaat
gatttgtttaaggaagtgagagctcttataacttcagtactggattacttttacatcgcc
ccagatccactgacctctgtcttaggagacagagtggctgtcctgacctactctcctcca
ggctacctgccaaactctgaggaatgcccagtctacctggaatttgatttggtcacttat
cacagtgtacaccaaatgaagcatcatctccaagagtctcttaagcagctcaatggagat
gtttttatcggccatgcccttcagtggacaattgacaatgtctttgtagggacccccaat
ctgaggaaaaacaaagttatctttataatatctgcgggtgaaaccagttctttagacaaa
gaagtcttaaggaatgcatctctgagagccaagtgccaaggctactccatctttgtattt
tcctttggtcctgtacacaatgacatggagttagaagaattagcgagccagcccctggat
catcacttggtgcagcttggccggatacacaagccagatttggactatatcattaagttt
gtcaagccctttgttcattcaatcagacgtgctatcaacaaatatcctaccagagagctg
caggccaagtgtgctaatgccaccttccccagcacagagaaggctggcacagaagacagt
ttattcctcatcccagaggtatacaaaatcgaggcaggagacagtgagctgtttggagac
tcccatccccaggagcagcatttctttgtactaggggacaatcatagtaacgattcgggg
atcactgctgatttgatccagaagttgtacgcgctcttctcctctggagaactgatggtg
aatgacaaggaagagccacatttggaagaagctgcagctccagcgaatgacaaacaagat
ggcgaggatgcaagatga
DBGET
integrated database retrieval system
