Peromyscus maniculatus bairdii (prairie deer mouse): 102911248
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Entry
102911248 CDS
T11302
Symbol
Col6a6
Name
(RefSeq) collagen alpha-6(VI) chain
KO
K06238
collagen type VI alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
pmav05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102911248 (Col6a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102911248 (Col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102911248 (Col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102911248 (Col6a6)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102911248 (Col6a6)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102911248 (Col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmav04147
]
102911248 (Col6a6)
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102911248 (Col6a6)
Exosome [BR:
pmav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102911248 (Col6a6)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102911248 (Col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
102911248 (Col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102911248
NCBI-ProteinID:
XP_076433087
LinkDB
All DBs
Position
7:complement(103641737..103779707)
Genome browser
AA seq
2257 aa
AA seq
DB search
MLLILFLTVICFRVCVNQDSGPEYADVVFLVDSSDHLGMKSFPLVRTFLNKLISSLPIEA
DKYRVALAQYSDALHNEFQLGTFKNRNPMLNHLKKNFGFIGGSLKIGNALREAHRTYFSA
STNGRDKKEFPPILVVLASAESEDDVEEASKALREDGVKIISVGMQEASEENLKAMATSQ
FHFNLRTVRDLSLFAPNMTQIIKDVTKYREGMADDVIVEACQGPSVADVVFLLDMAINGS
QENLDHLKAFLEESVSALDIKENCMRVGLVAYSNETRVISSLSMGINKTEVLQHIQDLSP
HVGQAYTGAALRKTRKEVFSAQRGSRKNQGVPQIAVLVTHRASEDNVTKAAVNLRREGVT
IFTMGIEGASPDQLEKIASYPAERFASKLSDFSELATHNQTFLKKLRKQITHTVSVFSER
TETLKSACVDTEEADIYLLIDGSGNTQPTDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYA
DTWDLEFEISKYTSKPDLGKAIENIRQLGGNPNTGAALNFTLKLLQKAKKQRGNKVPCHL
VVLTNGMSRDSVLEPAHRLREENIRVYAIGVKEANQTQLREIAGEEKRVYYVHEFDALRD
IRNQVVQEICAEEACRDMKADIMFLVDSSGSIGPENFSKMKMFMKNLVSKSQIGPDRVQI
GVVQFSHENKEEFQLNTFKSQSDISDAIDRMTLIGETTLTGSALTFVSQYFSPDKGARPN
VRKFLILITDGEAQDIVRDPAVALRRDGVIIYSVGVFGSNVTQLEEISGKREMVFYVENF
DILQHIEDALVLGICSPREECKRIEVLDVVFVIDSSGSIDYQEYNIMKDFMIGLVKKADV
GKNQVRFGALKYADDPEVLFYLDELGTKWEVISVLQNDQPMGGNTYTAEALAFSDHMFTE
ARGSRLHKGVPQVLIVITDGESHDAEKLNATAKALRDKGILVLAVGIAGANSWELLAMAG
SSDKYYFVETFGGLKGIFSDVSASVCNSSKVDCDIEKVDLVFLMDGSNSIHPNDFQKMKE
FLASVVQDFDVSLNRVRIGVAQFSDSYRSEFLLGTFTGEKEISTQIESIQQIFGYTHIGE
ALRKVRHYFLPDTGSRINAGTPQVLLVLTDGQSQDEVAQAAEELRHKGVDIYSVGIGDVD
DQQLIQITGTAEKKLTVHNFDELKKVKKRIVRNICTSGGESNCFVDVVVGFDISSQQRGQ
TLLEGQPWIETYLQDILRAISSLNGVSCEVGTETQVSIAFQVTNAMERYPSKFEIYSENI
LSSLQGVAVSGPSRLTANLLNSLWDTFQNKSAARGKVVLLFSDGLDDDIEKLEQKSDELR
KEGLNALITIAVDGAADSSNLADLLYIEFGKGFEYRTQFTIGMRSLGSQLSKQLINVAER
TCCCLLCRCTGGDGARGDPGSAGKKGPPGFKGSDGYLGEEGIAGERGASGPMGEQGSKGC
FGTKGPKGTRGLSGEEGEVGEHGIDGLSGEQGDSGVPGRRGEKGDEGSQGSPGTRGASGD
RGAKGLRGDPGIPGLDSNIQGPKGLKGDHGRQGRRGWPGPPGTPGSRRRMVVQGRRGHTG
PQGNPGIPGPDGLEGSPGLKGPQGPRGEPGEKGEKGVLGRKGPQGPPGPGGQAGNQGHLG
SQGNKGEPGDLGGKGAAGFPGPRGLQGDDGSPGYGSIGRKGSKGQEGFPGESGPKGETGD
PGDPGEAGPKGARGKTVSAGLPGEPGSSGEPGPPGRKGMKGAPGLASFSTCDLIQYVRDH
SQKSECPVHPTELVFVLDQSRDVTEQDFERMKGMMASLVKDVKVRETSCPVGARVAILSY
NSHTRHLIRFSDTYRKDQLLREIEALPFERSSDSRDIGKAMRFVSRNVFKRTLPGAHVRK
IATFFSSGQSADIQSITTAAMEFSALDIVPVVIAFSNVPSIKRAFSVDDTGTFQVIVVPS
GTDFAPTLERLQRCTFCYDICKPDASCDQAKPPPIQSYLDAAFLLDGSRHVESADFEDMR
DFLEALLDHFEVTPEPETSVTGDRVALLSHAPPTFLPNAQRSPVRSEFNLTTYSSKRLMK
RHVEQAVQQLNGDTFLGHALRWALDNVFLNTPNLRRNKVIFVISAGETSHLDEETLKEES
LRAKCQGYALFVFSLGPDWNDKELEDLASHPVDQHLIQLGRIHKPDHGYGVKFVKSFINS
IRRGMNKYPPVNFKAKCNRLSPTDPKPPPRQFRSFVPGPQKAILKDHAPEAAKLFQDKKH
LSSTWRGGRDAISRLSRNPFHTFKHGKVIKAASTHGK
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgattttgttcctgacagtgatttgtttccgtgtttgtgtgaaccaagattct
ggccctgagtatgcagatgtggtgtttctggtggacagctcagatcacctggggatgaag
tcctttcctcttgtgagaactttcctcaacaagctgatcagcagcctccccatcgaggcc
gacaagtaccgtgtggccctggcccagtacagtgatgctctccacaacgagttccagctg
ggcaccttcaagaacaggaaccccatgctgaaccacctgaagaagaacttcgggttcatt
ggtgggtccctgaagatagggaacgccctgcgagaggctcataggacctatttctctgca
tccacaaatggaagagacaagaaagagttccccccaatcctggtggtgctggcttcagcc
gagtctgaggatgatgtggaagaggcttcgaaagccctgcgggaagatggggtgaaaatc
atctcggtggggatgcaggaggcttctgaggaaaacctgaaggccatggccacatcccag
ttccatttcaacctcaggactgtcagagacctcagtttgtttgccccaaacatgacacag
atcatcaaggacgtgactaaatacagggaaggaatggctgatgacgttattgtagaagct
tgccaaggcccttctgtagctgatgtcgtgttcctgttggatatggccattaatggcagc
caggagaaccttgaccatctcaaagcattcctggaagaaagtgtctctgccctcgatatc
aaggaaaactgtatgagggttggtctggtggcctacagcaatgagacaagggtgatcagt
tccctgagcatgggtatcaataagacagaggtcctgcagcacatacaggacctgtctccc
catgtagggcaggcctacaccggggctgccctcagaaagaccaggaaggaagtcttcagt
gcacagaggggcagccggaagaaccaaggggtgcctcagattgctgtactggtgacccac
agagcttcggaggacaatgtgaccaaggcagctgtcaacctcaggcgtgagggagtgacc
atctttaccatgggcatagagggggccagcccagaccaactggagaaaattgcatcttac
cctgcagagcggtttgcctccaaactgagcgacttctccgagctggccacccacaatcag
acattcctgaagaagctgcggaagcaaatcacacacaccgtctctgtcttctcagaacgg
accgagaccctcaaatctgcctgtgtggacacagaggaagctgatatctatctgctcatt
gatggttcaggaaacacccagcccacagacttccacgaaatgaagaccttcctgtcagag
gtggtgggcatgttcaacattgctcctcacaaagtacgggtcggggccgtgcagtacgcc
gacacctgggacttggaatttgagatcagtaaatacaccagcaagcctgacttgggaaag
gccattgagaacatcaggcagttgggcgggaaccccaatacaggtgcagccctgaacttc
accctgaagctgttgcaaaaggcaaagaagcagcgaggaaacaaagtgccatgtcacctt
gtcgttctgacgaatggcatgtcccgggacagtgtcctggagcctgcgcacaggctgaga
gaggaaaacatccgtgtttatgctatcggagtcaaggaagccaaccaaacccagcttcgg
gagatagcgggagaggaaaagcgagtttactacgtgcatgagttcgatgccttgagggac
attaggaaccaggtggttcaagagatctgtgctgaagaagcctgcagagacatgaaagct
gacatcatgtttctggtagacagttctggcagcataggacctgaaaacttcagcaagatg
aagatgtttatgaagaacctagtgagcaaatcccagattgggccagaccgggttcaaatt
ggtgtggtccagttcagccatgagaacaaggaggagtttcagctcaacacattcaagtcc
caaagtgacatttccgacgccatcgaccgaatgactctcattggagaaacaaccttgaca
ggcagtgccctgacctttgtgtcccagtacttcagtcctgacaagggggcccggcccaat
gtcaggaagttcctcattctcattaccgacggtgaggctcaggacatagtaagggaccca
gcagttgcacttcggagagatggtgtgatcatctactctgtgggagtatttggctccaat
gtcacccagcttgaggagatcagtgggaaacgagagatggttttctatgttgagaacttt
gacattctgcagcatattgaagatgccctcgttctgggaatatgcagtccccgtgaagaa
tgcaagcggattgaagttttggatgttgtgtttgtcatcgatagctctggcagcattgac
tatcaagaatataacatcatgaaggacttcatgattggcctggtgaaaaaagctgacgtg
ggcaagaatcaggtccggttcggagctctgaaatacgctgatgacccggaagtgctgttt
tatctggatgaacttggcacaaagtgggaggtgatttcagtgctccagaatgaccagccc
atggggggtaacacttacactgctgaggccctggccttctcagatcacatgttcaccgaa
gcccggggcagccgtctgcacaagggagtcccccaggtcctcattgtgatcaccgatgga
gagtctcatgatgccgagaagctcaacgccaccgccaaggccctgagggacaaaggcatc
ctcgtcctggctgtggggatcgccggtgccaacagctgggagctgttagccatggcaggg
tcaagtgacaagtattacttcgtagagacgtttggaggcctgaaggggatattttctgac
gtgtcagctagtgtctgtaactcttcaaaagttgattgtgacattgaaaaggttgacctt
gttttcctcatggatggttcaaacagcatccatccgaatgacttccagaagatgaaggag
tttctggcatcagtcgttcaagactttgatgtcagcctcaacagagtgcgcataggagtg
gcccagttcagcgacagctacagatcagagtttctgctggggacgttcacaggggagaag
gagatatccacacagattgagagcatccagcagatatttgggtacacccacattggggag
gcactcaggaaggtgaggcactacttcctgccagacacgggcagcaggatcaatgcaggt
acccctcaggtgctgctggtcctcacagatggccaatcccaagacgaggtggctcaggcc
gccgaggagctgagacacaaaggtgtggacatctactcagtgggcattggggacgtggat
gaccagcagctgatccagatcacggggacagcagagaaaaaactgactgtccataacttt
gacgagctgaaaaaggtgaagaaaaggatcgttcgtaacatctgtacctcgggtggtgag
agcaattgttttgtggatgtcgtggttggatttgatatctcaagtcaacagagagggcag
actttgctcgaaggccagccttggatagaaacctacctccaagacatcttacgtgccatc
agctccctcaatggggtaagctgtgaggtgggcacggagacccaggtgagcatagctttt
caagtgacgaacgctatggaaagatacccttccaagtttgagatctacagtgagaacata
ctgagcagcctacaaggtgtggcagtgagtggcccatctcgtctcaccgcaaacctgctg
aattcactgtgggacacatttcaaaataagtccgctgcacgagggaaggtcgtccttcta
ttttcagatggattggatgatgacattgaaaaacttgaacagaaatctgatgaactcaga
aaggaaggcctgaacgccctcataactattgctgtggatggagctgccgactccagcaac
ctggctgaccttctctacatcgaatttgggaaaggatttgagtacagaacacagttcaca
attggtatgaggagccttgggagtcagctgtcaaagcaactaatcaacgttgcagaaagg
acctgctgctgtttgctgtgcaggtgcacgggaggggacggcgccaggggggatccagga
tcagcagggaaaaagggacccccaggttttaaaggcagtgatggctacctgggagaagag
ggcattgctggagaaagaggagcctctggaccaatgggagagcaaggtagtaagggatgc
tttggcaccaaagggcctaagggaaccagaggactcagtggagaagagggagaagtcggg
gaacatgggattgatggattaagtggagaacagggtgacagtggggttcctggaagaaga
ggagaaaaaggcgatgagggatctcagggaagcccaggcacgagaggggcttctggtgac
cgtggagcaaagggtctgcgaggagatccaggaattcctggacttgacagtaacatacaa
ggacccaagggcttgaaaggagaccacggaagacaaggcagaagaggctggccaggtcct
cccgggacaccaggctcaaggaggaggatggtagttcaaggccgaaggggacacacaggc
ccacagggaaatccaggcatcccaggcccagatggacttgaaggttcaccaggacttaag
ggccctcagggcccaagaggagagcctggtgagaaaggcgaaaagggagttctgggaagg
aaaggccctcaggggcctccaggacccggaggacaagcggggaatcagggccatttggga
agccaaggaaataaaggagagcctggagaccttgggggaaagggagctgctggctttcca
ggtcctcggggcctgcagggtgacgacggcagcccgggatacggcagcattggtcgcaaa
ggatcaaagggacaagaaggattccctggagaaagtggaccaaagggtgaaactggggat
cctggggatccaggagaggctggccccaagggagccagaggcaaaacggtatctgctggg
cttccaggagagccaggatcctctggggagccaggaccccctggacggaagggcatgaaa
ggggccccaggactggcttcattttccacatgtgacctcattcagtatgtgcgggatcac
agccaaaaatctgagtgcccagtgcatccaactgagctggtgtttgtcctggaccagtcc
cgggatgtcacagagcaggactttgagcggatgaaggggatgatggcttccctggttaag
gatgtcaaggtcagggagaccagctgccctgtgggtgcccgtgttgccatcctatcctat
aactcccacaccaggcacctcatccgcttctcggacacctacaggaaggatcagctgctc
agggaaatcgaagctcttccttttgagagatcctctgacagcagggatattggcaaagcc
atgaggtttgtctctaggaacgtcttcaagcgaacccttccaggggctcatgtgaggaaa
attgccacgttcttcagcagtggtcagtcggctgatatccagtccatcaccacggctgca
atggagttcagtgccctggacattgtgccggtggtgattgcattcagcaacgtgccgtcc
atcaagcgtgccttttcggttgacgacactggcacattccaagtcatcgtggttccctca
gggacggacttcgcgccaacattagagagactccagcggtgcactttctgctatgacata
tgcaagcccgatgcttcctgtgaccaagccaaaccacccccgatacagtcctacctggat
gctgcgttcctgctggatggctcccggcacgtggagagtgcagactttgaagacatgaga
gacttcctggaggcactgctagatcacttcgaagtcactccagagccagagacatctgtg
actggagacagggtggccctactgagccatgctccccccaccttcctacccaacgcccag
aggagtcccgttagatctgagttcaacctcaccacctacagcagtaagcgcctcatgaag
aggcacgtggagcaagcagtccagcagctgaatggggacactttccttggccatgccctc
aggtgggctctggacaatgtctttttaaacacacccaatctgaggagaaacaaagtcata
tttgtgatatctgctggggaaaccagccacttggatgaagaaaccttaaaggaagagtcc
ctgcgagccaaatgtcagggctatgccctctttgtgttttccttgggccctgactggaat
gacaaggaactggaagacctggccagccaccctgtggaccagcacttgatccagcttggc
cggattcataaacctgaccatggatatggtgtgaaatttgtgaagtccttcataaactcc
attaggcgtgggatgaacaagtacccaccagtcaacttcaaagccaagtgcaacagactc
agccctacagatccgaagccacccccacgccagtttcgaagctttgtcccgggaccacag
aaagctatcctcaaagaccacgcaccagaggcagcaaagctctttcaagataaaaagcac
ctttcaagcacatggagagggggcagagatgctatttcaaggctttccagaaacccattc
catacctttaaacacgggaaagtgataaaagctgcatccacacatggcaaatga
DBGET
integrated database retrieval system
