Peromyscus maniculatus bairdii (prairie deer mouse): 102911634
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Entry
102911634 CDS
T11302
Symbol
Col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04382
Cornified envelope formation
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04820
Cytoskeleton in muscle cells
pmav04926
Relaxin signaling pathway
pmav04933
AGE-RAGE signaling pathway in diabetic complications
pmav04974
Protein digestion and absorption
pmav05146
Amoebiasis
pmav05165
Human papillomavirus infection
pmav05200
Pathways in cancer
pmav05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102911634 (Col4a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102911634 (Col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102911634 (Col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102911634 (Col4a5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
102911634 (Col4a5)
09154 Digestive system
04974 Protein digestion and absorption
102911634 (Col4a5)
09158 Development and regeneration
04382 Cornified envelope formation
102911634 (Col4a5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102911634 (Col4a5)
09162 Cancer: specific types
05222 Small cell lung cancer
102911634 (Col4a5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102911634 (Col4a5)
09174 Infectious disease: parasitic
05146 Amoebiasis
102911634 (Col4a5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102911634 (Col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmav04147
]
102911634 (Col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102911634 (Col4a5)
Exosome [BR:
pmav04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102911634 (Col4a5)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102911634 (Col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102911634
NCBI-ProteinID:
XP_015847644
Ensembl:
ENSPEMG00000015542
UniProt:
A0A6J0CXI6
LinkDB
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Position
X:complement(49804807..49999462)
Genome browser
AA seq
1685 aa
AA seq
DB search
MQVREVCLASSWFLLALCLLGQPAEAAACHGCSLGSKCDCSGIKGEKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGQDGAPGPQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNQGYPGPPG
IQGPPGPKGISGPSGTPGPPGLMGPPGPPGPPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDLEFQKGDQGVPGDRGPPGPPGIPGPPGPPGGVKGEKGEPGEPGKRGKP
GKDGETGQPGIPGLPGDPGYPGEPGRHGEKGQKGDIGPPGPPGLVIPTHGTGVTVGEKGN
VGLPGLPGEKGERGFPGIQGPPGFPGPPGTAVMGPTGPPGYPGERGQKGDEGPPGICIPG
SPGLDGQPGAPGLPGPPGPPGPHLPPSEEICKAGPPGPPGSPGDKGLPGEQGVKGDKGDT
CFNCIGTGISGPPGQPGLPGRPGPPGSLGFPGEKGEKGHAGATGPKGLPGIPGPPGAPGF
PGSKGDPGDVLTLPGMKGDKGELGSPGAPGLPGLPGTPGKDGLPGLPGPKGEPGGIAFKG
ERGPPGNPGLPGPPGNMGPMGPVGFGPPGPIGEKGIQGVAGNPGQPGLPGPKGDPGQTIT
QPGKPGLPGNPGRDGEVGLPGDPGLPGQPGLPGIPGSKGEPGIPGIGLLGPPGPKGFPGI
PGPPGAPGTPGRMGPDGPPGSPGFPGPKGEPGFGLPGPPGPPGFPGFKGTPGPKGDRGFP
GPPGPPGRTGLDGLPGPKGDTGSNGQPGPIGPPGLPGIGIQGPPGPPGTPGPIGQPGLHG
IPGEKGDPGPPGFDVPGPPGERGSPGLPGVPGLIGPPGSPGLPGKAGVPGFPGAKGEIGM
MGPPGPPGPLGIPGRSGAPGLKGDDGMQGQPGLPGPAGEKGGKGEPGLPGPPGPMHPDFL
GSKGEKGEPGLPGIPGLSGPKGYQGLPGDPGQPGLSGEPGSPGLPGPKGDPGLPGPPGLT
GPPGLKGNIGDMGFPGPQGVDGPPGPPGVPGQPGSPGLPGQKGSKGEPGVSGIGLPGHPG
PKGEPGLPGYPGNPGIKGSVGETGLPGLPGSPGAKGQPGLPGFPGTPGLPGPKGMNGLPG
NPGLPGEPGPVGGGGRPGPPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGTPGPPGLPGL
SGQKGDGGSPGIPGNPGLPGSKGEPGFQGFPGMPGPPGPPGSPGPALEGPKGNPGPQGPP
GRPGLPGSEGPRGPPGNGGIKGERGNPGPPGQPGLPGLKGDQGPPGLPGNPGRPGLNGMK
GDPGLPGVPGFPGMKGPIGVPGSTGPDGEPGLTGPPGPPGLPGPSGQSIIIKGDAGPPGV
PGQPGLKGPPGLPGPQGLPGPIGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP
PGPDGLQGPPGPPGTISVAHGFLITRHSQTTDAPQCPQGTVHIYEGFSLLYVQGNKRAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKGQSIQPF
ISRCAVCEAPAVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVDMSDMFSKPQSETLKAGDLRTRISRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtgcgtgaagtgtgcctggcctccagctggttcttactggccctgtgtctgttg
gggcagcccgcagaggcggcggcctgccatgggtgttctcttggatcaaaatgtgactgc
agtggtataaaaggggaaaagggagaacgaggatttccaggtttggaaggccatccaggt
ttgccaggatttccaggtccagaagggcctccaggacctcggggacaaaagggtgatgat
ggaattccagggccaccaggaccaaaaggaatcagaggtcctcctggacttcctggtttc
ccagggacaccaggtcttcctggaatgccaggccaggatggagctccaggacctcaaggt
atccctggatgcaatggaaccaagggagaacgtggatttccaggcagtcccgggtttcct
ggtttacaaggtcccccaggacctcctgggatcccaggtatgaagggggaaccaggtagt
ataatcatgtcatcactgccaggaccaaagggtaatcaaggctacccaggtcctcctgga
atacaaggtccacctggtcccaagggcatatcagggccaagtggtactcctggaccacca
ggtttaatgggccctcctggaccaccaggaccaccaggaccaaagggaaacatgggcttg
aatttccagggacccaaaggtgaaaaaggtgagcaaggtcttcagggcccacctggtcca
cctggacagatcagtgaacagaaaagaccaattgatctagaatttcagaaaggagaccag
ggagttcctggtgatagaggccctccaggacctccaggaatacctggtcctccaggtcct
cctggtggtgtgaaaggtgaaaaaggtgagccgggagagccaggcaaaagaggtaaacca
ggcaaagacggagagactggccaacccggaatcccaggtttgcctggtgatcctggttac
cctggtgaaccaggaagacatggtgaaaagggccaaaagggtgatattggcccacctgga
cctcctggactcgtaattcctacacatgggactggtgtgactgtgggagaaaaaggaaat
gttgggctacctggtttgcctggagaaaaaggagagcgaggatttcctggaatacaaggt
ccacctggctttcctggacctccagggacagcagtcatgggtcctactggtccccctgga
tatcctggagaaaggggccagaaaggtgatgaaggtcctcctggaatttgtatccctgga
tctcctggacttgatggacagcctggggctcctggtcttccagggcctcctggtcctcct
ggccctcatttgccacccagtgaagagatatgtaaagcaggccctccaggtcccccagga
tctccaggtgataaaggactcccaggagagcaaggagtgaaaggtgacaaaggtgatacc
tgcttcaactgtatcggaactggcatttcagggcctccaggtcaacctggtctgccaggt
cgcccaggtcctccaggatctcttggattccctggagagaagggtgaaaaaggacatgct
ggagcgactggtccaaaaggattaccaggcatacctggacctcccggtgctccaggcttt
ccaggatctaaaggggaccctggtgatgtcctcactcttccaggaatgaaaggtgacaaa
ggagagttgggttcccctggcgctccagggcttcctggtctacctgggactcctggaaag
gatggactgccaggactccctggccccaaaggagagcctggtggaattgcttttaagggt
gaaagaggtcctcctgggaacccaggtttgccaggtcccccaggaaatatgggccctatg
ggccccgttggttttgggcccccaggccctataggtgaaaaaggcatacaaggtgttgca
ggaaatccaggccagccaggattaccaggtcctaaaggtgatccaggccagaccataacc
cagccagggaagcctggcctgccaggtaatccaggcagagacggtgaagtgggccttcca
ggtgatcccggacttcccggccaaccaggcctaccagggatacctggtagcaaaggagaa
ccaggtatcccggggattgggcttcttggaccaccaggtcccaaaggtttcccaggaatt
cctggacctccaggagcacctggaacacctggaagaatgggtccagatggacctcctggg
tcaccaggctttccaggaccaaagggagagccaggatttgggttacctgggccacctggg
ccaccaggattcccaggtttcaaaggcacacctggtccaaaaggtgatcgtggcttccca
ggacctccaggtcctccaggacgcactggcttggatgggctacctggaccaaaaggcgat
actggatcaaatggacaacctggcccaatagggcctcctgggcttccaggaattggtatt
cagggaccaccaggaccaccaggaactccagggccaataggccagcctgggttacatgga
ataccaggagagaagggagatccaggacctcctgggtttgatgttccaggacccccagga
gagagaggtagtccagggcttcctggagtccctggtcttataggacctccaggatcacct
ggtcttccaggaaaagcaggtgtccctggattcccaggtgccaaaggagaaataggtatg
atgggacctccaggcccacctggacccttgggaatccctggcagaagtggtgctcctggt
cttaaaggtgatgatggcatgcaaggtcagccaggccttcctggccctgcaggagaaaaa
ggtggtaaaggagaacctggccttccaggtccccctggaccaatgcatccagattttctg
ggatcaaaaggagagaagggtgagcctggcttaccaggtattcctggactttcaggacca
aaaggctaccagggtttacctggagacccagggcaacctggactgagtggagaacctgga
tcaccaggactaccaggtcccaagggtgaccctggtctccctggtccaccaggacttaca
gggcctcctgggcttaaaggaaacattggtgacatgggttttcctggccctcaaggtgtg
gatgggccccctgggccgcctggagttcctggacaacctggctctccagggttacctggc
cagaaaggaagtaaaggagagcctggcgtttcaggcattggtcttccaggtcatcctggt
ccaaagggtgaacctggtctacctggatatccaggaaacccaggtatcaaaggttccgtg
ggagagactggtctgcctggattaccaggaagcccgggagcaaaagggcagccaggcctg
cctggattcccaggaaccccagggcttcctggaccaaaaggtatgaatggtcttcctggt
aaccctggccttccaggagaacctggtcctgtaggtggtggagggcgtcctgggccacca
ggacctcctggcgaaaaaggcaagccaggtcaagatggcattcctggaccagcagggcag
aagggagaaccaggtcaaccaggctttggaaccccaggacctcctggactcccaggactt
tctggtcaaaagggtgatggaggatcacctggcattccaggaaatcctggtcttccaggt
tcaaagggtgaaccaggctttcagggattccctggtatgccaggtcccccaggtcctcct
ggttctcctggtccagctttggaaggccctaaaggaaaccctgggcctcaaggccctcct
gggagaccaggtctaccaggttctgaaggtccccgtggtccccctggaaatggaggcatt
aaaggagagaggggaaacccaggcccacctgggcaacctggcttacctggtttgaaagga
gatcaaggaccaccaggactcccgggtaatcctggccggccaggtctcaatggaatgaaa
ggagatcctggtctccctggtgttccaggattcccaggaatgaaaggacccattggagta
ccaggctcaacaggccctgatggggaaccaggccttacagggcccccaggtcctcccggg
ttgcctggtccttcaggacagagcattataatcaaaggagatgctggtcctccaggggtt
cctggccaacctggattgaaaggtccaccaggacttccaggccctcaaggcttaccaggt
ccaattggccctccaggtgatccagggcgcaatggactcccaggctttgacggtgcaggc
gggcgcaaaggagacccaggtctgccaggacaaccaggtacccgtggattggatggtccc
ccaggaccagatggattgcaaggacctccaggtccccctggaaccatctcagttgcccat
ggattcctcatcacacgccacagccaaacaacagatgcaccacaatgcccacagggaaca
gtccatatctatgaaggcttttctctcttatatgtacaaggaaataaaagagcccatggt
caagacttgggaaccgccggcagctgccttcgtcgattcagtaccatgcctttcatgttc
tgcaacattaacaatgtttgtaactttgcttcaagaaatgactattcttactggctttcc
accccagagcccatgccaatgagtatggaacccctaaagggccaaagcatccagccattc
attagtcgatgtgcagtatgtgaggcaccagctgtggtaattgcagttcacagccagact
attcaaattccacattgtcctcaggggtgggactctctgtggattggttattccttcatg
atgcatacaagtgcaggagcagaaggctcgggccaagccttagcctctcctggttcctgt
ttggaagaatttcgttcagctcccttcatcgagtgtcatgggcgggggacgtgcaactat
tatgccaattcatatagcttttggctggccacagttgatatgtcagacatgttcagtaaa
cctcagtcagagacactgaaagcaggagacttaaggacacgtattagccgatgtcaagta
tgcatgaagaggacataa
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integrated database retrieval system
