Peromyscus maniculatus bairdii (prairie deer mouse): 102911965
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Entry
102911965 CDS
T11302
Symbol
Col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04382
Cornified envelope formation
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04518
Integrin signaling
pmav04820
Cytoskeleton in muscle cells
pmav04926
Relaxin signaling pathway
pmav04933
AGE-RAGE signaling pathway in diabetic complications
pmav04974
Protein digestion and absorption
pmav05146
Amoebiasis
pmav05165
Human papillomavirus infection
pmav05200
Pathways in cancer
pmav05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102911965 (Col4a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102911965 (Col4a6)
04518 Integrin signaling
102911965 (Col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102911965 (Col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102911965 (Col4a6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
102911965 (Col4a6)
09154 Digestive system
04974 Protein digestion and absorption
102911965 (Col4a6)
09158 Development and regeneration
04382 Cornified envelope formation
102911965 (Col4a6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
102911965 (Col4a6)
09162 Cancer: specific types
05222 Small cell lung cancer
102911965 (Col4a6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102911965 (Col4a6)
09174 Infectious disease: parasitic
05146 Amoebiasis
102911965 (Col4a6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102911965 (Col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmav04147
]
102911965 (Col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102911965 (Col4a6)
Exosome [BR:
pmav04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102911965 (Col4a6)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102911965 (Col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102911965
NCBI-ProteinID:
XP_006970363
Ensembl:
ENSPEMG00000007750
UniProt:
A0A6I9KSH9
LinkDB
All DBs
Position
X:50000803..50305448
Genome browser
AA seq
1694 aa
AA seq
DB search
MHPGLWLFLVSLCLTKELAEAGQKKSYAKPCGGQDCSGSCTCSPEKGTRGRPGPIGTQGP
AGPEGFAGPIGLSGLKGERGSPGPLGPYGSKGDKGPMGVPGFVGINGIPGHPGQPGPRGP
PGLDGCNGTQGAVGFPGPDGYPGILGPPGLPGHKGSKGDSAPFQGSITGMKGDPGLPGLD
GITGPSGSPGSPGESGPIGPPGLQGPPGPPGPPGPDGNMGLGFQGEKGVKGDVGLPGPAG
PPPSTGELEFMGFPKGKKGSKGEPGPPGLPGMSGPPGFPEFGSIGEKGERGILGLPGPRG
PMGSEGIQGHPGRQGKKGTSGFPGINGFPGIKGEKGGVGLRGPDIFTDADGAVISGYPGD
PGVPGLPGLRGDEGIQGQRGPSGAPGRPSLRGLPGALGPQGFPGLKGDQGNPGRTTFGEA
GLPGRIGLPGLPGLPGLPGPSGPPNRTFETGPLPSMEPGFPGLRGERGPKGHQGLKGVKG
DSGFCACEVGAPNIGPHGEPGLPGTQGPIGLPGIKGTRGDPGSRGAPGPAGTPGLFGSRG
HTGLKGKKGEPTISRESKLSGDKGDAGPQGTPGMAGAPGKDGIPGLPGLPGIQGDSGSGF
PGEKGSPGLPGEKGHDGPTGPPGIGLPGLPGPRGLPGDKGVDGLPGQQGLRGAQGVTLPC
IIPGSFGPSGFPGAPGSPGSKGARGLPGIPGKPGTHGSKGEAGSPGLIHLPGLPGFPGPR
GEKGLPGFPGLPGKDGLPGKAGSPGLPGSKGATGDIFGAENGASGEQGLQGLPGDKGFLG
DSGLPGPTGLNGKSGMLGPKGEKGNPGTSGPPGQPGPSGSSDTFGIQGTSGPPGPAGLPG
ISGQSGKKGQRGDIGQPGSTGKRGLPGIKGLPGSQGTDGFLGSPGLPGVTGLPGILGQKG
EKGSSGPVGFPGLPGLPGIPGADGLKGISGSFGKVGQPGQAGTQGEKGDRGDPGSVGVSG
PRPPMLTLWFKGEKGSRGSAGSDGFLGPRGDKGEPGIPGLPGPPGAPGQSNTIKGLSGMP
GSPGSVGRSGLPGLKGSLGIAGFPGMPGKSGFQGRIGTSGPLGATGIPGLKGDQGQTLGI
SGSPGPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDDGKVGIAGDPGLPGSPGLQGISGM
RGDPGLPGSPGHLGSIGHPGPSGLIGPKGFSGLPGLHGLNGLPGTKGTHGTPGASITGVP
GPAGLPGPKGEKGMPGIGIGDPGEQGSRGQKGDRGFPGLQGPAGPPGAPGISLPSVIAGQ
PGDPGRPGLDGERGRPGLPGPPGPPGPSSDQGDPGDPGFPGIPGLQGLKGNQGLPGFSGL
SGDLGLKGMKGEPGFMGTPGKAGPPGDPGFPGMKGKAGPRGFSGPQGPPGHTPISQAIQV
PPGPLGLPGIDGIPGLPGDPGLRGAVGLQGSKGLPGIPGKDGPSGLPGPPGILGDPGLPG
LQGPPGFEGAPGQQGPLGRPGRPGHSVRVGYTLVKHSQSEHVPLCPVGMSRLWTGYSLLF
VEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVG
QTQIPQYISRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQS
LVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEERQQFREEPGSETLKTGQL
HTRVSRCQVCMKNL
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctggattgtggctgttcctggtttccttatgcctgaccaaagaactggcagaa
gcgggacagaagaagtcctatgcaaagccatgtgggggccaagattgcagtggaagctgt
acatgctctcctgagaagggaacaagagggcgccctggaccaattggaactcaaggtcca
gcaggtccagaaggatttgctggtcctattggtttatcggggttgaaaggagaaagaggc
tccccaggccctctgggaccatatggatcaaaaggagataagggtcccatgggagttcct
ggatttgttggcatcaatgggattccgggacaccctggacaaccaggacccagaggtcca
cctggcctagatggctgtaatggaactcaaggagctgttggatttccaggccctgatggc
tatcctgggattttaggaccacctggtctgcctggtcacaaaggttcaaaaggagactct
gctccttttcaaggcagcatcacaggaatgaagggggatcctgggctgcctggactggat
ggaatcaccggtccatcaggatcccctggatctcctggagaatcaggacccataggacca
ccaggcttacaaggtcccccaggcccacctggacctcctggtcctgatggaaatatgggg
ttaggtttccaaggagaaaaaggagtcaagggggatgttggcctccctggccctgcagga
ccacctccatctactggggaactagaattcatgggattccccaaagggaaaaaaggctcc
aagggtgaaccagggcctccaggtctcccaggcatgagtggccctccaggtttcccggag
tttgggtctattggagaaaaaggagaaaggggaatccttggtttgccaggacctaggggt
cccatgggttcagaaggaatacaaggacatccagggagacagggaaagaaggggacttca
ggttttcctggaattaatgggttcccaggaattaagggtgaaaagggtggcgttggtctg
cgaggcccagacattttcactgatgcagatggtgccgtgatctcaggttatcctggagat
cctggtgtgccaggcctcccaggccttagaggagatgaaggcatccaaggccaacgtggc
ccttctggcgcccctggccgcccatcgttaagaggtcttccaggtgccctcgggcctcag
ggatttccaggcctgaaaggagaccaaggaaacccaggacgcaccacctttggagaagct
ggcctgcctggcagaattggtttgccaggcttaccaggtttaccaggtctaccaggccca
tcaggcccacctaatcgcacatttgagacgggacccttgcctagcatggagcctggattc
cctggtctccgaggagaacgaggtccaaaaggacatcagggcctcaaaggagtaaaaggg
gactctgggttttgtgcttgtgaagttggtgcccccaacattggaccacatggtgaacca
ggcctgcctgggacacaaggtcccattggcctacctggtattaaagggactagaggagat
ccaggctctaggggtgcacctggcccagcagggactccagggttatttggatcgagaggt
catacaggcctcaaaggaaagaaaggagaaccaaccatcagtagagaatcaaaactgtca
ggagacaaaggtgatgctggtccccaggggaccccaggtatggcaggagctccaggcaag
gatggaataccaggtttaccagggcttccaggcattcagggagacagtggatctggcttc
ccaggtgaaaaggggtcaccaggacttcctggtgaaaagggccatgatggtccaactgga
ccaccaggaattgggctgccaggacttcctgggccacgtggacttcctggagataaagga
gtagatgggttaccagggcaacaagggctccgtggagctcagggagtcaccttgccttgt
attattcctgggtcgtttggtccatcaggatttcccggagctcctggatccccaggctct
aaaggagctcggggcctccctggaattccaggcaagcctggcactcatggaagcaaagga
gaggccggaagtccgggcttaattcatctcccgggactgccaggatttcctggacctcgt
ggagaaaagggattgcctggtttccctgggcttcctggaaaagatggcttgcctggaaag
gctggcagtccaggtttaccaggctccaagggagccactggtgacatctttggtgccgaa
aatggtgcttcaggggagcaaggcctacagggattgccaggggacaaaggatttcttgga
gactctggccttccaggacccacgggtttgaatggcaagtctggtatgctaggccccaaa
ggtgagaagggcaaccctggaacatcaggaccaccaggacagccaggaccctcaggatct
agtgatacatttggcatccagggcacatctggacccccaggaccagcaggccttccaggc
atttcagggcaatctggaaagaagggtcaaagaggagacataggtcaacctgggtcaact
ggaaaacgaggtctacctgggataaaaggccttcctggttctcaagggacagatggtttc
ctgggaagcccaggtttgccaggagtcactgggttgccaggcatcctaggccaaaagggt
gaaaaggggtcctctggaccagtagggtttcctggcttacctggtcttcccggtattcct
ggagctgatggattaaaaggaatttccggttcgtttggaaaggtgggacaacctggacag
gctggtactcagggtgaaaaaggagacagaggggatccagggtcagtcggcgtgtccggt
ccaagacctccgatgctgaccctttggttcaaaggagaaaaaggctctcgaggttctgct
ggatcagatggatttcttggacccagaggtgacaaaggagaacctggcatcccagggtta
ccaggcccacctggagctcctggacagtccaataccatcaaaggactcagtgggatgcca
ggttcccctggatctgtgggaagaagcggattacccggcctcaaggggtccctggggatc
gcaggtttcccaggaatgccaggaaaaagtggttttcagggtcgcattggaacttctggt
cccctgggagcaactggtatcccagggttaaaaggagaccaaggccaaacacttggcatt
tctggaagcccaggccccaagggacagcctggtgaattaggttttaaaggtgtaaaggga
aaagatggactagttggtgacagaggttacccaggaaacaagggcgacgatggaaaagtt
ggtattgctggagatcctggccttcctgggtccccaggacttcaagggatttcaggtatg
agaggagacccaggcctcccaggttcccctggccatctagggtcaattggccatcctgga
ccctctggcttaataggacctaaaggattctctggactacctggtttacatggactgaat
ggacttccaggcaccaagggtacccatggcactccaggagccagtatcactggtgttccg
gggcctgctggcttgcctggtcccaaaggggaaaagggaatgccaggaattggcattgga
gacccaggagaacaaggttcaaggggacaaaaaggtgaccgaggtttcccaggtctccaa
ggtcctgctggtccccccggagccccaggcatctctttgccctcagtcatagcaggacag
cctggtgaccctgggcggccaggcctagatggagaacgaggccgcccaggccttccagga
cctccaggtccccctggcccatcctcagaccaaggtgaccctggagaccctggcttccct
ggaattccaggccttcaagggctcaagggaaaccaaggacttccaggtttctctggcctt
tctggagatctaggactgaaaggcatgaaaggggagcctggcttcatggggactcctggc
aaggctgggccaccaggagacccaggatttcccgggatgaaggggaaggcggggccaaga
ggattttccgggccccagggtcctccaggacacacaccaatttcccaagctatccaggtt
cctccaggacctttgggtcttccaggcattgatggcatccctggcctcccgggagaccct
gggcttcgaggtgctgtgggtctgcaaggttctaaaggtctacctggcatccctggcaag
gacggccccagtggtcttccaggcccacctggaatcctgggcgatcctggtctccctgga
ctacaaggacctccaggatttgaaggagctccagggcagcagggtcccctggggaggcct
gggaggcctgggcacagtgtgagagtgggctacacactggtcaaacacagtcagtcagaa
cacgtgcccctgtgccctgtcgggatgagccgactgtggacgggctacagcttgctgttt
gtggaggggcaggagaaagcccataaccaggacctgggatttgctggctcctgcctgccc
cgattcagcaccatgcctttcatctactgcaacatcaatgaagtatgccactatgccagg
cgcaatgataaatcctactggctctccactactgcccccattcccatgatgcctgtgggc
cagacccagattccccagtacatcagtcgctgctctgtatgtgaggcaccctcacaagcc
attgctgtgcacagccaagacatcaccattccacagtgccctctgggctggcgcagcctc
tggattggttactccttcctcatgcacactgctgctggggctgagggtggaggccagtcc
ctagtctcccctggctcctgcctggaggacttccgggccactcctttcatcgagtgcaac
ggtgcccgcggtacctgccactactttgccaacaagtacagcttctggctgaccacagtg
gaggagagacagcagtttcgagaagagcctggttctgagacgctcaaaaccgggcagctc
cacaccagggtgagccgctgccaggtgtgtatgaaaaatctgtag
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