Peromyscus maniculatus bairdii (prairie deer mouse): 102913633
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Entry
102913633 CDS
T11302
Symbol
Col5a3
Name
(RefSeq) collagen alpha-3(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102913633 (Col5a3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102913633 (Col5a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102913633 (Col5a3)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102913633 (Col5a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102913633
NCBI-ProteinID:
XP_006987098
Ensembl:
ENSPEMG00000015543
UniProt:
A0A6I9M3T0
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Position
7:complement(16608148..16660083)
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AA seq
1741 aa
AA seq
DB search
MRSCRRPDQPRAGLCLLLASLQLVSWTLAVEPVDVLEALGVHRGQAGVTEAPGFCPQRSP
QGDRAFRVGKSSLLSVPTWQLFPDGHFPQNFSVLFTVRGQPANGSVLLSIYDEKGVRQLG
LALGPALGLFGDSFRPLPKQLNLMDGRWHRVAVSVSGDKVTLVADCDPQPPVFGQGPRFV
STAGLTMIGTQDSKEETFEGDIQELLLIPDPQAAFQACQHYLPGCDTPDPTTTEAPRDEP
ETTTPRRKGKGKKKGKGRKGKGRKKKNKENSRLSPTPGAPENQTSLHTLETERPIPRQSP
TPTPLAITTTVTVGRNATDLQQGYDSATETELRTPEIEATEEDEEGGGPTVGPKFRAAEQ
SFQTEFQIFPGAGEKGAKGEPATIEQGQQFEGPAGAPGPRGISGPSGPPGPPGFPGDRGL
PGPAGLPGIPGIDGVRGLPGTVIMMPFHFASSSSKGPPVSFQQAQAQAILQQAQLSMKGP
PGPVGLTGRPGPVGLPGYPGLKGESGDVGPQGPRGLQGPPGPPGREGKTGRAGADGARGL
PGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGEKGMQGPPGPTGQAGEPGP
RGLIGPRGLPGPLGRPGVTGSDGAPGAKGNVGPPGEPGPPGQQGNHGSQGIPGPQGPIGT
PGEKGPPGNPGIPGVPGAEGPPGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGN
RGLQGEKGERGEDGFPGFKGDGGPKGDRGNPGLPGPRGEDGPEGQKGPEGLAGDEGPPGA
AGEKGKLGVPGLPGYPGRPGPKGSTGFPGPLGPLGEKGKRGKAGQPGEEGERGVPGARGD
RGQPGATGQPGPKGDVGQNGSPGAPGEKGLPGLQGPPGFPGPKGPPGPQGKDGVPGHPGQ
RGELGFQGQTGPPGPAGVLGPQGKVGDVGPLGERGPPGPPGPPGEHGLPGTEGKEGAKGE
LGPLGSPGKEGPPGPMGFPGPQGAPGDPGPIGLKGDKGPPGPVGANGSPGERGPVGPSGG
IGLPGQSGGQGPVGPAGEKGSPGERGAPGPTGKDGIPGLPGLQGPPGAAGPSGEEGDKGE
VGMPGHKGSKGDKGDAGPPGPTGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGF
VGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSEGPPGLPGGVGQPGA
VGEKGEPGNTGDAGPPGIPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGSKGNMGP
TGLPGDLGPPGDPGVPGMDGIPGEKGDAGDVGGPGPPGASGEPGARGLPGKRGPPGRMGP
EGREGEKGAKGDAGPDGPPGRTGPTGARGPPGRLGPDGLPGIPGPVGGPGLLGPPGLIGP
PGPLGPPGLPGLKGDAGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPQGDTGL
PGPVGSLGHPGPPGVVGPLGQKGSKGSPGSLGPRGDTGPAGPPGPPGPPAELHGLRRRRS
VLDTPEGGMEEVMASLNSLSLELAQLQRPPGTAQHPGLICHELHRNHPHLPDGDYWIDPN
QGCSRDAFKVFCNFTAGGETCLYPDKKFETVKLASWSKEKPGDWYSTFRRGKKFSYVDAD
GSPVNVVQLTFLKLLSAAAHQRFTYSCQNSVAWLDEAAGDHRRSIRFRGTNWEELSFSQT
AAATVKVSHDGCRLRKGQAKTLFEFSSSRVGFLPLWDVAAIDFGQTNQKFGFELGPVCFR
S
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atgagaagctgccggagaccggaccagcctcgggccggcctctgcttgctcctggcctcc
ctgcagctcgtgtcctggacgctggctgtggagcctgtggatgtcctggaagccttaggg
gtgcacagaggccaggctggggttactgaggcgcccggcttctgtccccagaggagtcca
cagggtgaccgagcattcagggtgggcaagtccagcctactcagtgtccctacatggcag
ctctttccagatgggcattttcctcagaacttttctgtgctgttcactgtgcggggccag
ccagccaacgggtctgtccttctgtctatttacgacgagaagggcgtccggcagctgggg
ctggcactggggccagctctgggtctctttggcgactccttcaggcccctccccaagcag
ctcaacctcatggatggcaggtggcaccgtgtggcagtcagcgtcagtggtgacaaggtg
accctggtggctgactgtgaccctcagcctcccgtgtttggtcagggacctcggtttgtc
agcacggctggactcaccatgataggaacccaggacagcaaggaggagacttttgaggga
gacatccaggagctgctgttaatcccagaccctcaggctgccttccaggcctgccagcac
tacctccctggctgtgacaccccagatcccacaaccacagaggcccctagggatgaaccg
gaaacaaccacccctcgtcgaaagggcaaaggaaagaaaaaagggaagggtcgaaagggg
aaaggaagaaagaaaaagaacaaggagaactcaaggctgagcccaacgcctggcgccccc
gagaaccagacctccctgcacacccttgagacagagaggccgattccccgccagtccccg
actcctacacccttggccatcaccaccactgtgactgttggacgaaatgccactgacctg
cagcagggatatgactctgctactgaaactgagctgaggactccggagattgaggctact
gaggaggatgaagaaggaggtggccccaccgtgggccccaagttccgggcagcagagcag
tcttttcagactgagttccagatctttcctggtgctggagaaaagggagcaaaaggagaa
cctgcgacaatagagcagggacagcagtttgagggacctgcgggagccccaggaccccgg
ggaatatctggtccttcaggccctccaggccccccaggcttccctggcgaccgaggtcta
ccaggtcctgctggcctcccaggaatcccaggtattgatggagtccggggtctgcctggc
actgtgatcatgatgccgttccattttgcaagcagctcgtcgaaagggcccccagtctcc
ttccagcaggcccaggcgcaggcgatactgcagcaggctcagctctccatgaaagggccc
cctggtccagtggggctcactgggcgcccaggccctgtgggcctccctggatatccaggg
ctgaaaggtgaatcaggagatgtaggaccacagggtcccagaggattgcagggcccccct
gggcctcctggccgggaaggcaagacaggccgagctggagccgatggggctcggggtctc
ccgggagacacaggacctaagggtgaccggggctttgatggcctcccagggctgcctggt
gagaagggccagaggggtgactttggacatgtagggcaacccggtcccccaggagaggat
ggtgaaaagggcatgcagggacctccaggacccactggccaggctggagagccgggtccc
cgaggtctgattggccccagaggcctccctggacccctgggacgcccgggtgtgaccgga
agtgacggtgcgccaggtgccaaaggcaacgtgggtcctcccggagaaccaggtccccca
ggacagcaaggaaaccacggctcccagggaattccaggccctcaggggcccattggcact
cctggggaaaagggtcccccaggaaaccccggaattccaggtgttccaggagctgagggt
cccccgggtcacccaggccacgagggtcccacaggagaaaagggggcccagggtccacca
gggtcagcaggccctccgggctatcctggacctcggggtgtgaagggtacctctggcaac
cggggtctccaaggagagaaaggagaaaggggagaggatggctttcctggcttcaagggt
gatgggggaccaaaaggcgaccggggaaacccaggactcccaggtcccagaggagaggat
ggtcctgaaggacaaaaggggcccgagggactggctggggacgagggtcctccaggagca
gcaggggagaagggcaagcttggggtgccaggtctcccaggttacccaggacgcccagga
cctaagggatctactggatttcctggacccctgggaccgctgggagagaagggcaaaagg
ggcaaagcggggcagccaggggaggaaggagaacgcggtgtgccgggcgcccgaggagac
cggggacaaccaggggccacaggccagcctggccccaagggtgatgtgggccaaaacggg
tctcctggggcccctggagaaaagggtcttccgggtctgcaaggtcccccaggattccct
ggaccaaagggccccccaggtcctcaggggaaagatggggtacctggacaccctgggcaa
agaggagaattgggcttccaaggccagacgggcccccctggaccagctggcgtccttggt
cctcagggaaaggtaggggacgtggggcctctgggtgagaggggccctccagggccccct
ggacctcccggcgaacacggtcttccaggcacagagggcaaagaaggggccaagggtgag
ctaggacccctggggtcccctgggaaggaggggccacctgggcccatgggctttcctggc
ccccaaggagcccccggcgacccaggacccattggtttgaagggtgacaagggtcccccc
ggccctgttggggccaatggctccccgggcgagcgtggtcctgtgggcccttctggtggc
attggtcttcctggccagagtggtgggcaaggccctgttggtcctgctggtgagaagggg
tctccgggagaacggggtgcccctggtcccactgggaaagatggtatcccagggctgcca
ggacttcagggaccccctggagctgcggggccttctggtgaggaaggagacaagggggaa
gtagggatgcctggtcacaagggaagcaaaggggataaaggagatgcgggcccacccgga
ccaacagggataaggggtccagcgggtcatccaggccccccgggtgctgacggggctcag
ggtcgccggggaccccctggcctcttcgggcagaagggagacgatggagtccgaggcttt
gtaggtgtaattggtcctccaggtctgcaggggctgccgggccctcctggggagaagggc
gaggttggagatgtgggatccatgggtcctcatggagctccaggccctcggggtcctcct
gggcccagtggatcagagggtcctccagggctgcctggaggagtaggtcagcctggtgct
gtgggtgagaagggtgagccagggaatactggagacgctggacccccaggaattcccggc
atccctgggcccaaaggcgaaataggcgaaaagggggattcgggtccatcgggggctgct
ggacctccaggcaagaagggaccccctggagaggacgggtctaaagggaacatgggcccc
acaggactccctggagatctaggacccccaggagatcctggagttccgggcatggatggc
atccctggggagaagggagatgccggtgatgtcgggggaccgggaccacctggagcttca
ggcgaacctggtgcccgggggctccctggcaagaggggtccccctggccgcatgggtcca
gaaggcagagagggcgagaagggggccaagggagatgctggtcctgatgggcccccaggc
aggacaggtcccactggggcccgagggccccctggacggcttgggcctgatggtcttcca
gggatccctggtcctgtgggtggaccaggcctcctgggaccccctgggctgataggccct
ccagggcccctgggcccccctggcctcccagggctgaagggagatgctggccccaagggg
gagaagggccacattgggctaataggcctcattggtcccccaggggaggccggtgagaaa
ggcgatcaggggttaccaggagtgcagggtcctccaggcccccagggagacaccggtctt
cctggtccggttggctcgttaggtcaccctggtcccccaggtgtggtgggccctctggga
cagaagggctccaaggggtccccgggatctcttggtcctcgtggagacactggaccagcg
ggcccccctggccccccgggtccccctgctgagctgcatggcctgcgaaggcgccgctca
gtgttggatactccagaaggtgggatggaggaggtgatggcctcactcaattcgctgagc
ttggagctggcgcagctgcagcgacctcctggcacagcccaacacccaggcctcatatgc
catgagcttcaccgcaaccacccacacctgccagatggagactactggatcgaccccaac
cagggctgctcacgggatgccttcaaggttttctgcaacttcactgcgggaggtgagacc
tgtctctatccggacaagaagtttgagacggtgaaactggcctcctggtccaaagagaag
cctggagactggtacagcaccttccgccgagggaagaagttctcctacgtggatgccgat
ggctccccagtgaacgtggtccagttgaccttcctgaagctgctgagcgctgccgcccat
cagaggttcacttactcctgccagaactcagtggcctggctggatgaagctgcgggtgac
cacaggcgctccatccgcttccgagggaccaactgggaagagctgtccttcagccagacg
gcagcggctaccgtcaaggtctcccatgatggctgccggctccggaagggacaggcgaag
accctcttcgaattcagctcttcccgcgtgggttttctgcctctgtgggacgtggctgcc
attgacttcggccagacgaaccagaagtttgggtttgaacttggccccgtgtgctttcgc
agctga
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integrated database retrieval system
