Peromyscus maniculatus bairdii (prairie deer mouse): 102913658
Help
Entry
102913658 CDS
T11302
Symbol
Cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmav03016
]
102913658 (Cdkal1)
Enzymes [BR:
pmav01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
102913658 (Cdkal1)
Transfer RNA biogenesis [BR:
pmav03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
102913658 (Cdkal1)
Prokaryotic type
Methylthiotransferases
102913658 (Cdkal1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
102913658
NCBI-ProteinID:
XP_006972342
Ensembl:
ENSPEMG00000009808
LinkDB
All DBs
Position
5:complement(110675885..111246917)
Genome browser
AA seq
581 aa
AA seq
DB search
MPSASCDALLDDIEDIMSQEDSKPQDRHFSRKHVFPKVRRRNTQKDLQEEPRPPSDSTIP
GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRN
SIKKAQEENKKIVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQ
KKDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVER
AKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH
LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATD
IICGFPGETDQDFQETLKLVEEYKFPSLFINQFYPRPGTPAAKAEQVPAHLKKQRTKDLS
QVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPEFMGKMVEVDIYE
SGKHFLKGQPVSDTKIYTPSISKPLAKGEVSGLTREFRNRFGNHLNSTSDTCAATRRDSA
SSRSVLQMSQHDCALKVAAGLALLALLFAFLARVYAYNVPK
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcctcctgtgatgcactgctggatgacatagaagacatcatgtcacaggaa
gattcaaagccacaagacagacatttctcaaggaagcatgtatttcctaaagtacgaaga
cggaatacccaaaaagatttgcaagaggagcccaggccaccaagcgacagcactattcca
ggcatacagaaaatttggatacgaacatggggctgctcacataataattcagatggagaa
tacatggctggacagctggctgcctatggttataaaattacagaaaatgcgtcagatgca
gatttgtggcttctgaacagttgtactgtgaaaaacccagctgaagaccactttagaaac
tcaatcaaaaaagctcaagaggagaataagaaaattgtcctagctggctgtgttcctcaa
gcccagcctcgtcaggactacctcaaaggattgagcatcatcggggttcagcagattgac
cgtgtggtagaagttgtggaggaaacaattaaaggtcactcagtgaggctcctgggccag
aagaaagacaatgggaagcggttggggggagcgagactggatttgccaaagatcaggaag
aatccactgatagaaatcatttcaatcaacacagggtgtctcaatgcttgtacctactgc
aaaacgaagcacgccagaggaaacctggccagctaccccattgatgaacttgtagagaga
gccaagcaatcctttcaagagggtgtttgtgagatatggctgaccagcgaagacactggg
gcctatggcagagacattggcacagatctccccacactcctgtggaagttggtggaagtg
attcctgagggagccatgctgaggctgggcatgacaaatccaccgtatattttagagcat
ctggaggaaatggcgaaaatcctcaaccaccccagagtctacgcttttctccacatccca
gtgcagtccgcctctgacagcgtgctcatggacatgaagagagaatactgcgtggccgac
ttcaaaagagttgtggattttctcaaggagaaggttcctggaataacaattgctacggat
attatctgtggttttcctggagaaaccgatcaggattttcaagaaacactgaaacttgtt
gaagagtataaatttccaagcctcttcatcaaccagttctacccaagaccaggaactccc
gctgcaaaagctgaacaagtcccagctcacttgaaaaagcaaaggacaaaagatctctct
caggtgtttcattcctacaatccatatgatcacaagattggtgaaagacaacaagtgctc
gtaacagaggaatcctttgactccaagttttatgtcgcacacaatcgattctacgagcag
gttttggtgccaaagaatcctgaattcatggggaaaatggttgaagtagacatttatgaa
tcaggaaaacactttttgaaaggacagccagtatcggacaccaaaatctacacaccatcc
atcagcaagccgctggccaagggcgaagtctcgggcttgacaagggaattcaggaatagg
tttgggaatcatctgaattcaacttcagacacctgtgctgcaactcggcgtgactcggcc
tcttccagaagtgtgctgcagatgtcccagcatgactgtgcattgaaggtagctgcaggc
ctggctctccttgctcttctttttgcatttctggccagagtctatgcttacaacgtacct
aaatga
DBGET
integrated database retrieval system
