Peromyscus maniculatus bairdii (prairie deer mouse): 102913874
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Entry
102913874 CDS
T11302
Symbol
Brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X2
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
BRCT_2
zf-C3HC4_3
zf-RING_5
RING_XB3-XBAT31
zf-ANAPC11
zf-RING_6
zf-Nse
zf-RING_10
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
102913874
NCBI-ProteinID:
XP_042138787
LinkDB
All DBs
Position
8:complement(88501523..88578075)
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AA seq
1830 aa
AA seq
DB search
MDLSAVQIEEVQNVLHAMQKILECPICLELIKEPISTKCDHIFCKFCMLKLLNQKKGPSQ
CPLCKNEITKRSLQGSTRFGQLVEELLKITDAFERDTGMQFANSYSFSKMRNSSEPLNEE
ASIIQSIGYRDRVKRLRPIESGNATLQKDSLSVQLSNLGIVRSMKKTQQTQPRNKSVYIE
LESDSSEETVKRPDDCSVRDQELLQMTPREAGDEASLESAEKAACEFSEDITDIEQDQCS
NKDLNPIENHATERHPEKCQGIPVSNLHVEPCGTDIHASSLQQEKSSLLLAEDRMNVEKA
EFCNKSKQSGLARSQQNRWAESKETCNDRQIPSTEKKVDLDAESLCGRKKWNNQESLCPE
NARATQDVPWTTRNSSIQKVNEWFSKTGGTLAPDGTSDRRRQANAEAAAVLEVSNEVDGC
SSSLKETDFVASDPHNALMYKSKRDFSKPVENDIKDKIFGKTYQRKGGLPHLNHVTEILG
TYTTEPQITQANPFTNKLKRKRRTTCLQPEDFIKKADLTVIPKTPENINQGTDQMEPNGQ
VVGITSNGHENESKGSNLQKERNANPVKSLGKEPVFTTKAKAISNSVSDLELELNVRDSK
APKKNRLRRKSSTKCVLALEPVSGNPSPPTCTEFQIDSCSSGEETRKNNSSQRPIRHIRK
PQLTVDTEPAADAKKNNEPNEQIRKRRASDAFPEEKLTNTPGLLNNCPRSNEPQGPVSPR
PQSKEVEKRELSQMPDSTKDLKDLVLGGEQGLPTERSEESTSVSLVPDTDDDMQNSMSLL
EANTARYAKTGSGQCMTQFVASENPKELVHGSKDAGSSTEGFQHPLRHGLSHIQETEMEE
SELDTQYLQNTFQVPKRQSFTLFSKPRDPQKEGVTACASSMSLREVSAKVTSEGEQQEEN
RGHEESEISCGQAVTATVSVPLLHQEGKPGTDPVRAGVSRPCPSSQYRSNENDLSTAGDP
RIPQNSRLQQSVSPIMSFMKTDHRKTLSEGQFEKHTLSTEKAMGNETVVQSKKHTVSQNN
RKNACQEASSGSINEVCSSGENFQGQLGRSGGTKLNTVLPLGLMQSGICKQSFPVSDYEN
LKIKKQGGKSLGADSSPCLFADKLEQPLGSGNGFQVCSETPDDLLDDVEMQENTSFGEGD
ILEKSAVFNGSVQRRELSRSPSPLTHASLIRSLRRGSRKLEDSEESECEDEDLPSFQHLL
GRVSTTPDLTRLSSVGTQHLSEKAAGTQAPGKRTISADSSEVILVEDSQEHPLGEDPKCS
GSLFSSQHSAVQDSAVQDSAANAASQDPLFNPPSKQMSHQSENEQVFPSDKELISDEEMG
ACLEEDSDQEEDIIIPDSGEAASGYESETNLSEDGSQSEILTTQQRATMKDNLIKLRQEM
AQLEAVLEQQGNQPSGHSSPLIADPCAPEDPPDPEQNIPGTAILTSKNINENPVSRNPVC
ISADKFQPQPPDSSTSKNKETRVGRPSSFKSPSAGNRCASHSRSGSLQNRSFQSQEELLQ
VVEAEKSCEPHNLTGPSYLPRQDLEGTPYLESGISLFSNRDPESESSEEPALVCTTPAST
STRKISQCQAAESFKGPAAACAHTAAVETVSEMKPALTSSKGRATKGISMVVSGLTLKEV
MIVQKFAEKYRLILTDVITEETTHVIIKTDAELVCERTLKYFLGIAGGKWIVSYSWVIRS
IQERKLLDVHEFEVKGDVVTGRNHQGPKRSRESQEKLFRGLKICCCEPFTNMPKDELEKM
LQLCGASVVKEVSSLTQDTGSQPIVIIQPSAWTEENGCPAEIGQLCEAHLVMWDWVLDSI
SVYRCQDLDAYLVQNITHGHDCSEPQDPND
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atggatttatctgctgttcaaattgaagaagtacaaaatgtccttcatgctatgcagaaa
atcctagaatgtccaatctgtttggaactgatcaaagaacccatttccacaaagtgcgat
cacatattttgcaaattttgtatgctgaaacttcttaaccagaagaaagggccttcacaa
tgtcctttgtgtaagaatgagataaccaaaaggagcctgcaaggaagcacaaggtttggt
cagcttgtcgaagagcttttgaaaatcactgatgcttttgagcgtgacacagggatgcag
tttgcaaacagttacagtttttcaaaaatgagaaattcttctgaacctttgaatgaggag
gcttctattatccagagtataggctaccgagaccgtgtcaaaagacttcgaccgattgaa
tctggaaatgccaccttgcagaaggacagtcttagtgtccaactgtctaaccttggaatt
gtgagatcaatgaagaaaactcagcagacacagccgcgaaataaatctgtgtacattgaa
ttagagtctgattcttctgaagagacagttaagaggccagatgattgcagtgtgagagac
caggaattgttacaaatgacccctcgggaagccggagatgaagccagtttggagtctgca
gaaaaggctgcttgtgagttttctgaggacataacagatattgaacaggatcaatgcagt
aataaagatttgaaccccattgagaatcatgcaactgaaaggcatccagaaaaatgtcag
ggtattcctgtttcaaacttacatgtggagccatgtggcacggatattcatgccagctca
ttacagcaggagaagagcagtttattactcgctgaagacagaatgaatgtagaaaaggct
gaattctgtaataaaagcaaacagtctggcttagcaaggagccaacagaacagatgggct
gagagtaaagaaacatgtaatgataggcagattcccagcactgagaaaaaggtagatctg
gatgctgagtccctctgtgggaggaagaaatggaataatcaggaaagtctgtgccctgag
aatgctagagctacccaagatgttccttggacgacacgaaatagcagcattcagaaagtt
aacgagtggttctccaagactggtggaacgttagctcctgacggcacttcagacaggagg
cggcaggcaaatgctgaagcagctgctgtgctcgaagtttccaatgaagtagatgggtgt
tccagttctttaaaggaaacagacttcgtggcctctgatccccataatgctttaatgtat
aagagcaaaagagacttctccaaaccagtagagaatgatatcaaagataaaatatttggg
aagacatatcagagaaagggaggcctccctcacttgaaccatgtaactgaaattctaggc
acatatactacagaaccacagataacacaagcgaaccccttcacaaataaattaaaacgt
aaaaggagaactacatgccttcagcctgaggattttatcaagaaagcagatttaacagtt
attccaaagactcctgaaaatataaatcagggaactgaccaaatggagccgaatggccaa
gtggtgggtattaccagtaatggtcatgagaacgagtcaaaaggcagtaatcttcagaaa
gagagaaatgctaatccagtaaaatcactgggaaaagagcctgttttcacaactaaagcc
aaagctataagcaacagtgtaagtgatttggagctagaattaaacgtccgcgattcaaaa
gctccgaagaaaaataggctgaggaggaaatcttccaccaaatgtgttcttgcacttgaa
ccagtcagtgggaatcccagcccacctacttgtaccgaatttcaaattgatagttgtagt
agcggtgaagaaacaaggaaaaacaattccagccaaaggccaatcaggcatattagaaag
cctcagctcacagtggacacagaacctgcagcagatgccaagaagaataatgagccaaat
gaacaaataaggaagagaagggccagtgatgctttcccagaagagaaactaacaaacaca
cctggtttattaaataactgtccacgttctaatgaacctcaagggcctgtcagtcctcgc
cctcagagcaaagaagtagagaaacgtgaactaagccaaatgcctgacagtaccaaagac
ctgaaggatctggtgctgggtggagagcaaggtttacctactgagagatctgaggagagt
accagcgtttcactggtccctgacactgatgatgacatgcagaacagtatgtcattactg
gaagctaacactgccagatatgcaaaaacaggatcaggtcagtgcatgactcagtttgta
gcaagtgaaaaccccaaggaactggtccacggttctaaagatgctggaagcagcactgag
ggcttccagcatccactgagacacggacttagccacattcaggagacagaaatggaagag
agtgaacttgatactcagtatttacagaatacatttcaagttccaaagcgtcagtcattt
actttattttccaaaccaagagatccccaaaaggagggtgtaacagcctgtgcttcctcc
atgtccttaagggaagtgagtgcaaaagtgacttctgaaggtgaacaacaagaagaaaat
cggggacatgaagaatctgaaatcagttgtggacaggcagtgactgccacagtgagtgta
cctctgcttcatcaggaaggtaagccaggcaccgatccagtgcgtgctggagtgtccagg
ccttgtccatcatctcagtacagaagcaatgaaaacgatctcagcactgcgggtgacccc
agaattccacaaaactcacgtcttcaacaatcagtttctcccatcatgtcctttatgaag
actgaccataggaaaactctgtcagagggacaatttgagaaacatacattgtcaactgaa
aaggccatgggaaatgagacagttgttcaaagtaaaaaacacacagttagccaaaacaac
aggaaaaatgcttgtcaagaagccagctcaggcagtattaatgaagtatgttccagtggt
gaaaacttccaaggacagctaggtagaagcggagggactaagttaaacactgtgcttccg
ttaggtcttatgcaatctggaatctgtaagcaaagttttcctgtgagtgattatgaaaat
cttaaaataaaaaagcagggaggtaagagtcttggtgcagactcctctccgtgtctgttc
gccgataagctcgaacaacctctggggagtggtaatggttttcaggtttgttctgagaca
cctgatgacctgttggatgatgttgaaatgcaggaaaacactagcttcggtgagggtgac
atcctggagaagtctgctgtttttaatggaagtgtccagagaagagagttgagcaggagc
cctagccctttaacccatgcgtcgctgattcggagtctccgtagagggtctaggaaatta
gaggactcagaagagagtgaatgtgaggatgaagatcttcccagcttccagcacttgctt
ggcagagtaagcactacacctgaccttaccagactgagcagtgtcgggacacagcatctg
tccgagaaggccgcggggacccaggcaccggggaagcgcaccatcagtgctgacagtagc
gaggtgatcttggtagaggattcccaggaacatccccttggtgaggacccaaaatgctct
ggcagcctgttctcctcccagcacagtgccgtacaagacagtgccgtacaagactcggct
gcaaacgcagcctcccaggaccccttgtttaatcctccctccaaacagatgagtcaccag
tctgagaacgagcaagtttttccaagtgacaaggaattgatttcagatgaggaaatggga
gcttgcctagaagaagacagtgatcaagaagaggatattataatcccagattcaggtgaa
gcggcttctgggtacgagagtgaaaccaacctttctgaagatggctcccagagtgagatt
ttaaccacgcagcagagggccaccatgaaagataacttgataaagctccggcaggagatg
gcccagctggaagccgtgctagagcagcaggggaaccagccttctggccactcttcgccc
ctcatcgccgacccttgtgcccccgaagacccgccagatccggagcagaacatcccagga
acagcaattttaacttcaaagaacattaatgagaatcctgtaagccggaatccagtgtgc
atttctgctgacaagttccaaccacaacctccagatagttccaccagtaaaaataaagag
acaagagtgggaaggccttcctcttttaaatctccgtcggcaggcaataggtgcgcctcc
cacagccgctctgggagtcttcaaaacagaagcttccagtctcaagaggagctccttcag
gttgttgaagcagagaagtcatgtgaaccacacaacttaacagggccatcttacttgcca
aggcaagatctagaaggaaccccatatctggaatctggaatcagccttttttctaataga
gaccctgagtctgagtcctctgaagagccagctcttgtttgcacgacaccagcttcaacc
tctacacggaaaatatcccagtgtcaagctgctgagtctttcaagggtccagctgctgct
tgtgctcacactgcagctgtagaaactgtgagcgagatgaagccagcactgacatcttca
aaaggaagagccactaaaggaatatccatggtggtgtcaggcttgaccctcaaagaagta
atgattgtgcaaaagtttgctgaaaaataccgcctcattttaactgatgtaattactgaa
gagactacacatgtcattataaaaacagatgctgagcttgtgtgtgaacggacactgaaa
tattttctgggaattgcaggaggaaaatggatagttagttattcatgggtgatccggtct
attcaagaaagaaaacttctggatgtgcatgaatttgaagtcaaaggagatgtggtgact
gggaggaaccaccaaggtccaaagcgatccagagaatcccaggaaaagctcttcagaggc
ctaaaaatctgttgttgtgagcccttcaccaacatgcccaaagatgagctggagaagatg
ctacagctgtgtggagcttccgtggtgaaggaggtttcatcactgacccaagacacaggt
tctcaaccaattgtgatcatacagccaagtgcctggacagaagagaatggctgccctgca
gagattgggcagctgtgtgaggcacatctggtgatgtgggactgggtgttggacagtata
tccgtctaccgatgtcaggatttggatgcctacctggtacagaatatcacccatggccat
gactgtagcgagccacaagaccccaatgattag
DBGET
integrated database retrieval system
