Peromyscus maniculatus bairdii (prairie deer mouse): 102914181
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Entry
102914181 CDS
T11302
Symbol
Sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03015
mRNA surveillance pathway
pmav04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102914181 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
102914181 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmav03021
]
102914181 (Sympk)
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102914181 (Sympk)
Transcription machinery [BR:
pmav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102914181 (Sympk)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102914181 (Sympk)
U7-dependent histone pre-mRNA processing factors
102914181 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
INTS7_N
Motif
Other DBs
NCBI-GeneID:
102914181
NCBI-ProteinID:
XP_042128384
Ensembl:
ENSPEMG00000007564
UniProt:
A0A6I9MBF6
LinkDB
All DBs
Position
1:29581751..29614881
Genome browser
AA seq
1279 aa
AA seq
DB search
MASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVINDLQEACWDMVSSMAGEIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKRPRDDADSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQTSGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSVQGQAISVVGSLSTMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGL
KAEVLSFILEDVRGRLDLAFAWLYQEYNAYLAAGASGTLDKYEDCLIRLLSGLQEKPDQK
DGVFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLGDLIFKRPSRQFQYLHVLLDL
SSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
ARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEASGKQEPEVKDTPAGPLEEDDLEPLALALAPAPAPAPRPPQ
DLIGLRLAQEKALKRQLEEEQKLKPTGVGVPAASASSSMPAVVPAARAGPTPAEEAMEYR
EEGPECETPAIFISMDDDSGLAESTLLDSSLEGPLPKEAAAVGPSSKDERSPQSLNHAVE
ETLTTSSPETREPESKGNS
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcggcagtggagacagtgtcacccgccggagcgtggcatcacagtttttcaca
caagaggaagggccaggcattgatggcatgaccacttctgagagggtggtggatcttctg
aaccaggcagcgttgatcaccaatgactccaagatcacagtgctcaaacaggtccaggag
ctgatcatcaacaaagaccccaccctgctcgacaacttcctggatgagatcatcgctttc
caagcagacaagtccattgaagtgcgcaaatttgtcattggcttcatcgaggaggcatgc
aagagagacattgagctgctgctaaagctcatcgccaacctcaacatgctcctgcgggat
gagaatgtgaacgtggtgaagaaggccattctcaccatgacccagctctacaaggtggcc
ctgcagtggatggtgaagtctcgggtcatcaacgatctccaggaggcctgctgggacatg
gtgtcctccatggctggggaaatcatcctgctgttggattctgacaatgatggcatccgt
acacatgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatggctgat
tcagaagtcccccgacgccaggagcatgacatcagtctggaccggattcctcgagatcac
ccctacatccagtacaatgtcctgtgggaagaaggcaaggcggccttggagcagctgctg
aagttcatggtacaccccgccatctcctccatcaacctgaccacagccctgggctccctt
gccaacatcgcccgccagagacccatgttcatgtccgaggtgatccaggcctatgagacc
ctgcatgccaacctgcccccaacactggccaagtcccaggtgagcagcgtgcgtaagaac
ctcaagctgcacttgctgagcgtgctcaagcaccctgcctccttggagttccaggcccag
atcaccaccctgctggtggacctgggcaccccccaggcagagatcgcccgcaacatgccc
agcagcaaggattcccgcaaacggccccgggatgatgccgactccacgctgaagaagatg
aagctggagcccaacttgggagaagacgatgaggacaaagacttggagcctggaccatcc
gggacttcgaaggcctcggcccagacctcaggccagtcagacacggacatcaccgctgag
ttcttgcagcctctgctgacacccgacaatgtggccaatctggtcctcatcagcatggtg
tacctgcctgagaccatgcctgcctccttccaagccatctacaccccggtggagtcagca
ggcactgaagcccagatcaagcacctggctcggctcatggccacgcagatgacagccgcg
gggctgggtcctggtgtggagcagacgaaacagtgcaaggaggagcccaaggaggagaag
gtggtgaagccggagagcgtcctcatcaagcggcgcctgtctgtgcagggccaggccatc
tccgtggtgggctctctgagcaccatgtcccccttggaggaggaggtaccccaggccaag
aggaggccggagcctatcatccctgtcacgcagccacggctggcaggcgctggtgggcgc
aagaagatcttccgtctgagtgatgtgctgaagcccctgacagatgcccaggtggaagcc
atgaagctgggagctgtgaagcggatcctgagggctgagaaggctgtagcctgcagtggg
gcggcccaggtgcgcatcaagatcctggccagcctggtgacacagtttgactctggactc
aaggcagaggtgctgtccttcatcctggaagatgtccggggccgcctggacctggctttc
gcctggctctaccaggagtacaacgcctacctagccgcaggggcctcgggcaccctggac
aagtacgaggactgcctcatccgcctgctctctggcctgcaggagaaaccggaccagaag
gacggggtcttcaccaaggtggttttggaggccccgctgatcaccgagagtgccttggag
gtgatacggaagtactgtgaggatgagagccgcgcctacctgggcatgtcgacacttgga
gacctgatcttcaagcgcccttctcgacagttccagtacctgcacgtcctccttgacctc
agctcgcatgagaaggacagggtgcgctcccaggccctgctcttcattaagcgcatgtat
gagaaggagcagcttcgagagtatgtggagaaattcgccctcaactacctgcagctcctg
gtccaccccaacccgccctcagtgctcttcggagctgacaaggacacagaggtggctgcg
ccctggaccgaggagacagtgaagcagtgtctttacctctatctggctctcctgcctcag
aaccacaagctgatccatgagctggcagccgtgtacactgaggccatcgccgacatcaag
cggacagtgctcagggtcattgagcagccgatccgagggatgggcatgaactccccagag
ctgctgctgctagtggaaaactgccccaagggggcggagacgctggtcacccgctgcctg
cacagcctcaccgacaaagtgccgccgtccccagagctggtgaagcgggtccgagacctg
taccacaagcggctgcccgacgtgcgcttcctcatccctgtgctcaacgggctggagaag
aaagaggtgatccaggccctgcccaagctcatcaaactcaaccccatcgtggtgaaggag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaactcagccctgtcgcccctg
aatccgggagagctgctgattgccttgcacaacattgactccgtgaagtgtgacatgaaa
tccatcatcaaagccaccaacctgtgttttgcggagcgcaatgtgtacacctcggaggtg
ctagctgtggtgatgcagcagctgatggagcaaagccccctgcccatgctgctcatgcgg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
gcccgcctcatcatgaagcaggtgtggaagtaccccaaggtatgggagggcttcatcaag
tgctgccagcgcaccaagccgcagagcttccaggtcatcctgcagcttcctccgcagcag
ctcggtgcggtcttcgataagtgccctgagctccgggagcctctgctggcccacgtgcgc
tccttcaccccccaccagcaagcacacattcccaactccatcatgactatcctggaggcc
agcggcaagcaggaaccggaagtcaaggacacgcctgcagggcccctggaagaggatgac
ctggaacccttggcactggctctggccccggccccggcccctgctccacggccccctcag
gacctcatcggcctgcgattggctcaggagaaggccctgaagcggcagctggaggaggaa
cagaagctgaagcccacaggcgtgggagtgcctgccgcctcggcatcctcctccatgccg
gcggtggtgccagcggcccgagccggtcccaccccggctgaggaggccatggaataccgg
gaggagggtcccgaatgtgagaccccggccatcttcatcagcatggatgacgactcaggg
ctggctgaaagcacactcctggactctagtcttgagggtcccctgcctaaggaggcagca
gcagtcggaccgagctccaaggatgagcggagccctcagagcctcaaccacgccgtggag
gaaaccttgacaacctccagcccggagaccagggagcccgagagcaaggggaacagctga
DBGET
integrated database retrieval system
