Peromyscus maniculatus bairdii (prairie deer mouse): 102914275
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Entry
102914275 CDS
T11302
Symbol
Col1a1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04611
Platelet activation
pmav04820
Cytoskeleton in muscle cells
pmav04926
Relaxin signaling pathway
pmav04933
AGE-RAGE signaling pathway in diabetic complications
pmav04974
Protein digestion and absorption
pmav05146
Amoebiasis
pmav05165
Human papillomavirus infection
pmav05205
Proteoglycans in cancer
pmav05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102914275 (Col1a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102914275 (Col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102914275 (Col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102914275 (Col1a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
102914275 (Col1a1)
09152 Endocrine system
04926 Relaxin signaling pathway
102914275 (Col1a1)
09154 Digestive system
04974 Protein digestion and absorption
102914275 (Col1a1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
102914275 (Col1a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
102914275 (Col1a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
102914275 (Col1a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
102914275 (Col1a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102914275 (Col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102914275 (Col1a1)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102914275 (Col1a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102914275
NCBI-ProteinID:
XP_006972005
Ensembl:
ENSPEMG00000024212
UniProt:
A0A6I9KVQ3
LinkDB
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Position
8:81817494..81834392
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AA seq
1453 aa
AA seq
DB search
MFSFVDLRLLLLLGATALLTHGQVDIPEITCIHNGVKIPNGETWKADVCVICICHNGTAV
CDEVKCTEKLDCPNPQRREGECCAFCPEDLGSPGQELLGVEGPKGERGPQGPRGPSGPPG
QDGIPGQPGLPGPPGPPGPPGLPGLGGNFASQMSYGYDEKSAGVSVPGPMGPSGPRGLPG
PPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPSGPQG
ARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERG
RPGPPGSAGARGNDGATGAAGPPGPTGPTGPPGFPGAVGAKGEAGPQGARGSEGPQGIRG
EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPSGAPGPKG
NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPG
SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG
KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGTAGEPGKVGERGVPGPPGPVGPAG
KDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPG
PSGARGERGFPGERGVQGPPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGMPG
ERGAAGLPGPKGDRGDAGPKGADGTPGKDGPRGLTGPIGPPGPAGAPGDKGETGPSGPAG
PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGETGTKGDTGPPGPAGPAGPPG
PIGNVGAPGPKGPRGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKGPRG
ETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGSPGTPGPQGIAGQRGVVGLPGQRGERG
FPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGSPG
PKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPAGARGPAGPQG
PRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSAGAPG
KDGVNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSFLPQPPQEKAHD
GGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDWKS
GEYWIDPNQGCNLDAIKVFCNMETGQTCVFPTQPSVPQKNWYISNNHKEKKHVWFGESMT
DGFQFEYGSEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALLLQ
GSNEIELRGEGNSRFTYSTLVDGCTSHTGSWGKTVIEYKTTKTSRLPIIDVAPLDIGAPD
QEFGLDIGPACFV
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttaggagccactgccctcctgacg
catggccaagtagacatccctgaaatcacctgcatacacaatggcgtaaagatccccaat
ggtgagacgtggaaagccgatgtctgcgtgatctgtatctgccacaatggcacggccgtg
tgcgatgaagtaaagtgcaccgaaaagttggactgtcccaacccccaaagacgcgagggc
gagtgctgtgctttctgcccagaagaccttggatcaccaggccaagaactcttaggagtc
gagggacccaagggagaacgtggccctcaaggcccaaggggaccctctggcccccctgga
caagatggcatccctggacagcctggacttcctggtcctcctggtcctcctggtcccccg
ggcctccctggcctcggaggaaactttgcttcccagatgtcctatggctatgatgagaaa
tcagctggcgtctccgtgcctggccccatgggtccttctggtccccgtggtcttcctggc
ccccctggcgcacctggtcctcagggtttccaaggtccccctggtgaacctggcgagcct
ggcgcttcaggtccaatgggtccccgaggtccccctggccctcctggcaagaacggagat
gatggggaagctggtaaacctggccgtcctggtgagcgtggaccttctgggcctcagggt
gctcggggattgcctggaacagctggcctccctggaatgaagggacacagaggtttcagt
ggtttggatggtgccaagggagatgctggtcctgctggtcctaagggagagcctggcagt
cccggtgaaaatggagctcctggccagatgggtccccgaggtctgcctggtgaaagaggt
cgccctggaccccctggctctgctggtgctcgtggtaacgatggtgctactggtgcagct
ggacccccaggacctactggccccactggccctcctggcttccctggtgcagttggtgct
aagggtgaagctggtccccaaggagcccgaggctctgaaggcccccagggtattcgtggt
gaacccggaccccctggccctgctggtgctgctggccctgctggaaaccccggtgctgat
ggacaacctggtgctaaaggtgctaatggtgctcctggtattgctggtgctcctggcttc
cctggcgcccgaggcccctctggaccccagggccccagcggcgctccaggtcccaagggt
aacagcggtgaacctggtgctcccggcaacaaaggggacactggtgccaaaggagagccc
ggccctgctggagttcaaggtccccctggccctgctggggaagaaggaaaacgaggagcc
cgtggcgaacccggacctactggcctgcctggacctcctggcgagcgtggtggacctggc
agccgtggtttccctggtgctgatggtgtcgctggccccaagggtcctgctggtgaacgt
ggttctcctgggcctgctggtcccaaaggttctcctggtgaagctggtcgccctggtgaa
gctggtctccccggtgccaagggtctcactggcagtcctggcagccctggtcctgatggc
aaaaccggcccccctggtcccgctggtcaagatggtcgccccggacccccaggtcctcct
ggagcccgtggccaggctggcgtgatgggattccccggacctaagggcactgctggagag
cccggaaaagttggagagcggggtgttcccggaccccctggccctgttggtcctgctggc
aaagatggagaagctggagctcaaggtgcccccggacctgccggtcctgctggtgagaga
ggcgagcaaggccccgctggctcccctggattccagggtctccccggccctgctggtcct
cctggtgaagccggcaagcccggtgaacagggtgttcctggagaccttggtgcccctgga
ccctctggagcaagaggcgaaagaggtttccctggtgagcgtggtgtacaaggtccccca
ggtcctgctggtccccgtggaaacaatggtgctcccggcaatgatggcgccaagggtgat
actggtgcccctggagcccccggtagccaaggcgctcctggtcttcagggaatgcctggt
gaacgtggtgcagctggtcttccaggccctaagggtgacagaggtgatgctggtcccaaa
ggtgctgacggcactcctggcaaagatggtccccgtggtctgactggtcccattggtcct
cccggccctgctggtgcccctggtgacaagggtgaaactggtcccagtggtcctgctggt
cccaccggagcccgtggtgcccccggagaccgtggtgagcccggcccccctggccctgct
ggtttcgctggcccccctggtgctgatggccaacctggcgctaaaggcgaacctggagaa
acgggtactaaaggcgacactggtcctcccggccccgctggacctgctggaccccctggc
cccattggtaacgttggtgctcctggacccaaaggtcctcgtggctctgctggtccccct
ggtgctactggttttcctggtgctgctggtcgcgttggtccccctggcccctctggaaat
gctggaccccctggccctcccggtcccgtcggcaaagaaggaggcaaaggtccccgtggt
gagactggtcccgcgggacgtcctggtgaagttggtcccccaggtccccctggccctgct
ggtgagaaaggagcccctggtgctgatggacccgctggctctcctggtacccctggacct
cagggcattgctggacagcgtggtgtggttggccttcccggtcagagaggagaaagaggc
ttccctggtcttcctggcccctctggcgaacctggcaagcaaggtccttctggatcaagt
ggcgaacgtggtccccctggccccatgggcccccctggattggctggcccccctggtgaa
tctggacgtgaaggatcccccggtgctgaaggctcccctggaagagatggctctcctggc
cccaagggtgaccgtggtgagaccggccctgctggcccccctggtgcccccggtgccccc
ggtgctcctggccccgttggccctgctggcaagagtggcgaccgtggtgagactggtcct
gctggtcctgctggtcccattggccctgctggtgcccgtggccctgctggaccccaaggt
ccccgtggtgacaagggtgagacaggcgaacagggtgacagaggcataaagggtcatcgt
ggtttctccggcctccagggtcctcctggctcccctggctctcctggtgaacaaggtccc
tctggagcttctggacctgcaggtccccggggtccccctggctctgctggtgctcctggc
aaagatggagtcaacggtctccctggccccattggtccccctggtcctcgaggtcgcact
ggtgatagcggtcctgctggtccccccggccctcctggaccccctggccctcctggtcct
cccagtggtggttacgacttcagcttcctgcctcagccacctcaagagaaggctcatgat
ggtggccgctactaccgggctgatgatgccaacgtggtccgtgaccgtgaccttgaggtg
gacaccaccctcaagagcctgagccagcagattgagaacatccgaagccccgaaggcagc
cgcaagaaccccgcccgcacatgccgtgacctcaagatgtgccactctgactggaagagc
ggagagtactggattgaccctaaccaaggctgcaacctggatgccatcaaggtcttctgc
aacatggagacaggtcagacctgtgtgttccccactcagccttctgtgccccagaagaac
tggtacatcagcaataaccacaaggaaaagaagcatgtctggttcggcgagagcatgact
gacggattccagttcgagtatggaagcgagggctccgaccctgctgatgtcgccatccag
ctgaccttcctgcgcctgatgtccactgaggcctcccaaaacatcacctaccactgcaag
aacagcgtagcctacatggatcagcagactggcaacctcaagaaggccctgctcctccag
ggttccaacgagatcgagctccgcggcgagggcaacagccgcttcacctacagcactctc
gtcgacggctgcacgagtcacaccggaagttggggcaagacagtcatcgaatacaaaacc
accaagacctcccgcctgcccatcatcgatgtggctcccttggacattggtgccccagac
caggaattcggattagacattggccctgcctgcttcgtgtaa
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