Peromyscus maniculatus bairdii (prairie deer mouse): 102915296
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Entry
102915296 CDS
T11302
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03013
Nucleocytoplasmic transport
pmav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102915296 (Upf1)
03015 mRNA surveillance pathway
102915296 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102915296 (Upf1)
Enzymes [BR:
pmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102915296 (Upf1)
5.6.2.5 RNA 5'-3' helicase
102915296 (Upf1)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102915296 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
102915296 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102915296
NCBI-ProteinID:
XP_076409187
Ensembl:
ENSPEMG00000001085
LinkDB
All DBs
Position
17:complement(1972695..1995267)
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNLTQRPDYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacaccgaggaa
gccgagctgctcggcgccgacacccagggttccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggcgcgggaggcccgggcggagcg
ggcgcaggcggcgcggcgggccagctcgacgcgcaagttggaccagagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagccaactgctggctgagctgaacttt
gaagaagatgaagaagacacatactacaccaaggacctcccagtccacgcctgcagttac
tgtggaatccatgatcctgcctgcgtggtttactgcaataccagcaagaagtggttctgc
aacggccgaggaaatacttctggcagccacattgtgaatcacctggtgagggccaagtgc
aaggaggtgacgctgcacaaggacgggccgctgggcgagacggtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctgggcttcatccctgccaaggccgactcggtggtg
gtgctgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctcggagcaggagcagcttcgggcacggcagatcacggcacagcagatcaacaagctg
gaggagctgtggaaggaaaacccttcggctaccctggaggacctggagaagccaggtgtg
gatgaggagccacagcacgtgctcttgcggtatgaggatgcttaccagtaccagaacatc
ttcgggcccttggtcaagctagaggctgactacgacaagaagctgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggtgacgagatctgtctgcggtacaaaggggacctagcacccctgtgg
aaggggattggccacgtcatcaaggtccctgacaacttaactcagcggccagattacggt
gatgagattgccatcgagctccgcagcagcgtgggcgcacccgtggaggtgacccacaac
ttccaggtggatttcgtgtggaagtcgacctcctttgataggatgcaaagtgcgctgaag
accttcgctgtggacgagacttctgtgtcaggatacatctaccataagctgctgggccac
gaggtggaggatgtggtcatcaagtgccagctgccaaagcggttcacagctcaggggctc
cccgacctcaaccactctcaggtgtatgctgtgaagaccgtgctgcagagaccactcagc
ctcatccagggccctccaggcacaggcaagacggtgacgtcggccactattgtctaccac
cttgctcggcagggtaacgggcctgtgctggtctgcgccccaagtaacatcgctgtggac
cagctcacagagaagatccaccagacaggcctgaaggtcgtacgtctctgtgccaagagc
cgcgaggccattgactccccagtgtccttcctggctctccacaaccagatcaggaacatg
gacagcatgcccgagctgcagaagctgcagcagctgaaggacgagacgggtgagctgtcg
tctgcagacgagaagcggtaccgggcgctcaagcgcacagcggagagagagctgctcatg
aacgcagatgtcatctgctgcacttgtgtgggtgctggtgacccaagactggccaagatg
cagttccgttccatcctcatcgatgagagcacacaggccaccgagcctgagtgcatggtg
cccgtagtccttggggccaagcagctgatcctcgtgggtgaccactgtcagctgggacca
gtggtgatgtgcaagaaggcagccaaggccggactgtcacagtcgctctttgagcgcctg
gtggtgctgggcatccggcccatccgcctgcaggtgcagtaccgcatgcaccccgccctc
agcgccttcccgtccaacatcttctacgagggctcactgcagaatggcgtcactgcagcg
gatcgtgtcaagaagggctttgacttccagtggccacagcctgacaagcccatgttcttc
tacgtgacacagggccaggaggagattgccagctcgggcacgtcctacctcaacaggacg
gaggcagccaacgtggagaagataactacaaagctgctgaaggcgggcgccaagcctgac
cagattggcatcatcacaccgtacgagggccagcgctcttacctggtgcagtacatgcag
ttcagtggctccctgcacaccaagctctaccaggaagtggagattgccagtgtggacgcc
ttccagggccgggagaaggacttcattatcctgtcctgtgtgcgtgccaacgagcaccag
ggcatcgggttcctgaatgaccctcggcgtctcaatgtggccctcaccagagcgagatac
ggcgtgatcatcgtgggaaacccgaaggcgctgtcgaagcagccgctgtggaaccacctg
ctgagctactataaggagcagaaggcgctggtggaggggccgctgaacaacctgcgggag
agtctcatgcagttcagcaagccccgcaagctcgtcaacaccgtcaacccgggggcccgc
ttcatgacgacagccatgtatgatgcccgggaggccatcatccctggatccgtctatgac
cgcagcagccagggccggccctcaaacatgtacttccagacccacgaccagattggcatg
atcagcgcaggtcccagccacgtggccgccatgaacatccccattcccttcaacctggtc
atgcctcccatgccgccaccgggctactttggacaggccaacgggccggctgctggccgg
ggcaccccaaaaagcaagactggccgtggaggccgccagaagaaccgcttcgggcttcct
gggcccagccagaccacccttcccaacagccaggccagccaggacgtggcctcgcagccc
ttctcgcagggggccctcacgcagggctacgtgtccatgagccagccctcccagatgagc
cagcccggcctctcccagcccgaactgtcccaggacagctacctcggtgatgagtttaag
tcacagatcgacgtggccctctcgcaagactccacgtaccagggagagcgggcataccag
cacggcggggtcaccgggctgtcccagtactag
DBGET
integrated database retrieval system
