Peromyscus maniculatus bairdii (prairie deer mouse): 102915549
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Entry
102915549 CDS
T11302
Symbol
Col11a2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102915549 (Col11a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102915549 (Col11a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102915549 (Col11a2)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102915549 (Col11a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102915549
NCBI-ProteinID:
XP_015845719
Ensembl:
ENSPEMG00000016918
UniProt:
A0A6J0CRV2
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Position
21:complement(3847075..3875560)
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AA seq
1735 aa
AA seq
DB search
MERCSPRHRLLLLLPLVLGLSAAPGWAGAPSVDVLRALRFPSLPDGVRKSKGVCPADVAY
RVSRPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVQQLGLELGRPV
RFLYEDQTGRPQAPAQPVFRGLSLADGKWHRVAVAVKNQSVTLIVDCKKRVTRPLPRSVH
PVLDTRGVVIFGAHILDDEVFEGDVQELIIVPGVQAAYQYCGQKDLECEKAQRDGPQIQK
PHRAQRSPKKQPSRLHKPQNQEPQRQPTESLYYDYEPPYYDVMTTGTAPDYQYPTPGEEE
GAPESSPLPFLEEEQTDPQVPPTVGSFQGEEYGEGGTDPPAGLYDYTYGYGDYHEETELG
PALSAETAHSGAVAHGPRGLKGEKGEPAVLEPGMFVEGPPGPEGPAGLAGPPGIQGSPGP
VGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSSGGDKGPVVAAQEAQAQAILQQA
RLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAG
ADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGDIGPRG
LPGESGPRGLLGPKGPPGIPGPPGIRGMDGPHGPKGSLGPQGEPGPPGQQGTPGTQGLPG
PQGAIGPHGEKGPRGKPGLPGMPGSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRG
VKGVDGIRGLKGHKGEKGEDGFPGFKGDVGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTG
DPGPTGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKAGPRGERG
PTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDG
LPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGESGPMGERGHPGPPGPPGEQGLPGTAG
KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERG
AAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAG
EDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKG
DEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPG
GVGNLGPPGDKGEPGESGSPGVQGEPGVKGPRGERGEKGEAGQAGEAGPPGPKGPTGDDG
PKGNPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRG
PAGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPG
ATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQGSPG
QKGETGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEVI
QPLPIQMPKKTRRSVDGSQLMQDDEAEPTGGAPGTPAGLEEIFGSLDSLREEIEQMRKPT
GTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVTQ
FSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSVVPQDGPLRLRGANEDELSPETSPY
VKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPTRRGGVLLGPVCFLG
NT seq
5208 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagcccccgccaccgcctcctgctgctgctacctctggtgctggggctg
agtgctgccccgggatgggcaggtgcaccctctgtggatgtactacgtgccctgaggttc
ccctcccttcctgatggtgtccggaaatcaaaaggggtctgtccggctgatgtggcttac
cgcgtgtcacgacctgcccagctcagtgcacccacccgccagctcttcccaggaggcttt
cccaaagatttctctctgctgacggttgtccggacccgccctggcctccaggctcccctc
ttgactctgtacagtgcccagggagtccagcagctgggcctggagctcggtcgccctgtt
cgctttctgtatgaggaccagacgggacggccacaagcccccgctcagcctgtcttccga
ggcctcagcctagcagacggcaagtggcaccgtgtggctgtggctgtgaagaatcagtct
gtcaccctcattgtggactgtaagaagcgagtcaccaggccccttccccgaagtgtgcat
ccggtgttggacacccgtggggtggtgatctttggtgcccatatcctagatgacgaagtc
tttgagggtgatgttcaggagctcatcattgtcccaggcgtccaagctgcctatcagtat
tgtggacagaaggatctggaatgtgagaaggcacagagagatggacctcagatccagaag
cctcacagagcccagagatctccaaagaagcagccatcgagacttcataagccacagaac
caggagccccagcgacagcccactgagtctctctactatgactacgagcccccctattac
gatgtgatgactacagggacggcccctgattaccagtaccccaccccaggtgaagaggaa
ggagccccggagtccagccccttgccattccttgaagaggagcagacagatccccaggtt
cccccaacagtcggcagtttccagggagaggagtatggggagggtggtacagacccccca
gcagggctctacgattacacctatggctatggggactatcatgaggagacggagcttggc
cctgccctctctgcggagaccgctcactcaggagccgttgcccacggaccccgggggctg
aagggagagaaaggagagcccgcggtgctggagcccggcatgttcgtcgagggcccccct
ggcccagaaggccctgcgggattggctggaccccctggcatccaggggagcccaggccca
gttggagaccctggcgagagggggccccctggccgggcaggcctccccggatcagatgga
gcccctggtcctcctggcacgtctctgatgctcccattccggtttggcagtagtgggggt
gacaagggccccgtggtggccgcccaggaggcccaggcccaggccattctgcagcaggct
cggctggcactccgtggaccccctggccccatgggatacacaggccgccctggacccttg
ggtcagcctgggagccccggcttgaaaggagaatccggagacctgggtcctcagggcccc
agaggacctcagggcctcacaggccctcctggcaaggctgggcgaaggggccgggccggt
gccgacggagcccgcgggatgcccggagaacctggtgtgaagggtgaccgaggttttgac
ggacttccagggctacccggcgagaaaggacacaggggtgatactggtgctcagggcctt
cctgggcctcccggcgaagatggagagcgtggtgacgatggagacattgggccccggggg
ctgcctggagagtctggacccagaggacttcttggccccaaaggtccacctggtattccg
gggccgccgggaatccgaggcatggatggcccccatggccccaaagggagtttgggacct
caaggagagccagggccccctggacagcagggcactcccgggacccagggcctccccgga
ccccagggtgccatcggtcctcatggagagaagggccctcgtgggaaaccagggctccct
ggcatgcctgggtcagacgggctcccgggtcaccccgggaaggaaggtccccctggaacc
aaagggaaccaggggccctctggaccgcagggtcctttaggatacccaggccctcgaggt
gtcaagggtgtggatggaattcggggcctgaagggccacaagggtgaaaagggcgaggat
ggctttcctgggttcaaaggtgatgtaggcgtgaaaggagacaggggtgaggttggagtc
cctggctccaggggagaagacggccctgaagggccaaaaggacgcactggacctacgggg
gaccctggacccactgggctcatgggcgagaagggcaagctaggtgttcccgggctgcct
ggctaccccggacgccagggtcccaaggggtccctggggtttcctggttttcctggagcc
agcggagagaagggagctcggggcctgtctggaaaagcaggacctcggggagaacggggc
cccacaggcccgaggggtcagcggggacctcggggtgccactgggaagtctggagccaag
ggaacatcaggtggtgacggtccccacgggccacccggagagaggggtcttcctggccct
caaggccccaatggatttcctggccccaaaggccctccgggccccgcagggaaggacggg
ctgccgggacacccaggccagagaggagaagtgggattccaagggaagaccggcccccca
gggccccctggagtggtgggacctcagggagcagctggggaaagcggtcccatgggcgag
agaggtcaccctggccccccaggacctcctggagagcaaggactgcctggaacagctgga
aaggaagggaccaagggtgatcctggtccccctggggccccagggaaggatggtcctgct
ggtctgagaggcttcccgggagagcgaggcctcccaggcactgctggtggacctggcctg
aagggaaatgagggtccagctggccctcctggccccgcaggctcccctggggagcgaggt
gcagcaggatcaggaggccccattggtcccccagggcgtccaggcccacaaggtccccct
ggagcagcaggagagaaaggcgtcccgggtgagaagggccctattggtcccactggccgt
gacggggtgcagggtcctgtggggcttcctggtccagcgggacccccaggtgtggctgga
gaggatggggacaagggtgaggtgggggacccaggacagaagggtaccaaagggaacaaa
ggcgagcatggccctcctggacctcctggtcccatcggtcctgtggggcagcctggagct
gcgggagctgatggggaacctggagctcgggggccccagggacactttggagccaaaggc
gacgaagggacaagaggattcaatgggcccccgggacccattggcctccagggcctgcca
ggaccttctggggagaagggagaaacaggagacgtggggcctatgggaccccctggccct
ccaggacctcgcggccccgccggacccaatggtgctgacggcccacaaggtccccctgga
ggtgttgggaacctgggtccccctggagacaagggggagccgggagagtctgggtctcca
ggcgtccagggtgagccgggtgtcaagggtccacgtggtgaacgtggcgagaaaggagag
gctgggcaggcgggagaggctggaccaccagggcctaaaggccctacaggcgatgatggc
cccaaggggaaccctggtcctgttggctttcctggggaccctgggccccctggagaagct
ggcccacggggccaggatggtgccaagggtgaccggggagaggatggcgagccaggacag
cctggatcccctggtcccaccggggagaatgggccccctggaccccttgggaagcgggga
cctgctggcacccctggtccagagggacgacaaggagagaaaggagccaagggggaccct
ggtgctgtcggggccccaggaaagacaggccctgtgggtcctgcaggcccggcgggaaag
cctggccctgatggtctgcgggggctcccaggctcagtgggtcaacaaggtcgtcctgga
gccacaggccaggctggacccccaggtcctgtgggacccccagggcttcctggcctccgg
ggtgatgctggagccaagggagagaagggccacccgggtctcatcggactgattgggccg
actggagagcaaggagagaagggtgaccggggccttcctggccctcagggctcccccgga
cagaagggagagacgggtatcccaggagcatctggccccatcggtcctggagggcctcct
ggcctgcccggacccgctggccccaaaggagccaaaggagccacaggcccagccggaccc
aaaggagagaagggtgtgcagggccctccaggacacccgggccccccaggcgaggtgatc
cagccactgcccatccagatgcccaagaagacccgccgctctgtggacggcagccaactg
atgcaggacgatgaggctgagcccactggtggggccccgggcacgcctgcggggctggag
gagatctttggctcactggactctctgcgggaggagatcgagcagatgaggaagccgaca
gggacccaggacagccctgctcgcacctgccaggacttgaagctgtgccaccccgagctc
cctgatggagagtactgggttgaccccaaccagggctgtgctcgggatgccttccgggtg
ttctgcaactttacagcaggaggggagacttgtgttacacctagggatgatgtcacacag
ttctcctatgtggactctgagggctccccggtgggtgtggtccagctcaccttcctgcgt
ctgctcagcgtctctgcccaccaggacgtctcctacccttgctctgtagtaccccaggat
ggccccctgagactccggggggccaatgaggatgaattgagccccgagaccagcccctac
gtcaaggagttcagagacggttgtcagacccagcaaggccggacggtgttggaggtgcgc
acacctgtgttggagcagctgcccgtgctggacgcctccttctcagacctgggggccccc
acgaggcggggaggagtgcttctgggtcctgtctgcttcctgggctag
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integrated database retrieval system
