Peromyscus maniculatus bairdii (prairie deer mouse): 102916143
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Entry
102916143 CDS
T11302
Name
(RefSeq) LOW QUALITY PROTEIN: BLOC-2 complex member HPS5
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmav04131
]
102916143
Membrane trafficking [BR:
pmav04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
102916143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_HPS5
Beta-prop_HPS5
WD40_WDHD1_1st
PEP5_VPS11_N
Beta-prop_EML_2
Beta-prop_THOC3
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
WD40_CDC20-Fz
Beta-prop_Vps41
Beta-prop_IFT140_2nd
Beta-prop_RIG_1st
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
102916143
NCBI-ProteinID:
XP_076399023
LinkDB
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Position
1:complement(55545227..55588233)
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AA seq
1127 aa
AA seq
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MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSRLKCTSIAVSRKWLALGSTGGGLNLIQ
KDGWKQRLFLSHREGAISQIACCSHDDDYVAVATSQGVVVVWELNQERRGKPERIHVSSE
HKGRKVTALCWDTAVLRVFVGDCVGKVSAIKLNSLKQAKAAAAFVMFPVQTITTVDSCVV
QLDYLDGRLLVSSLTRCFLCDTEREKFWKIGNKERDGEYGACFFPGKFAGSQQPLIYCAR
PGSRMWEVNFDGEVLSTHQFKKLLALPPLPVITASSEPRYDPTVGSSQSLSFPRLLHLSE
HCVLTWTEKGIXIFIPQNVQVLLWSEVKDIQDVAVYKNELFCLHFNGKISHLSLLSVERC
VERLLRRGLWDLAARTCCLFQNSIVTSRARKTLTTDKLEHLKSQLDLTTYSELISQLDEL
ILKFEPLDSACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSSSLHSQTFSEDER
LKEFGSHQEEEQPEQGCGASRNEDSVPHGLVTSETEKSEAFLPFSIPLPFRSPSPRVSLQ
AVKDSVSSFVRKTTEKIGTFHTSPELKETFESKDVDQVHEEEVSAVTCPLEEDTEEEEIS
QLLEEDSLQELTAVTAEAMTKLLDPLVLFEPKSLRTVLREWLSQLEKTFASKDVAGVSST
SSLPMKLNLDVHVLTESEERVLGEDSEEEKGNSLGIEEPGGHIACESVSSFSEPLGDLFR
VCSPYTIANSLQKDLVELTTLCLELNVLTSVVESIGGHVDRALQQLSPEILACHFLKKYF
FLLDLKRARESIKLSYTNNPCVWDTFVEGLKEMASSSPAYLEMEEGDLPTGLQLLDGSVP
SDSPLLMAFATRLYDRFGESALRAFIKFYPSISPSDIAQLCRHHPAQFLAYLDSLVKSRP
EDQWPSFLEFLLQPESLRLDWLLLAVSHDAPPSTSTVDDEGHPRPHSHLLSWGYSQLILL
LIKLPADFTIKEKMTDICKSYGFWPGYLTLCLELERRREAFTNIVYLNDISLMEGDNGWI
PETLEEWKLLLHLLQNKSSRPTPHKSLNGSLSDGPVPINVENVALLLAKAMGPDRAWSLL
QECGLALELSTKFTRTCDILRIAERRQRALIQGMLEKCDRFLWSQQA
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgtgccagtgataccagaagcctacagccatgttcttgcagagtttgagtcc
ttggatccattactcacagctttgcggctggactccagtcgtctaaagtgtaccagcata
gctgtgtctcggaaatggttggcattaggcagcacaggaggaggactcaatcttattcag
aaagatggctggaagcaaaggctgtttctctctcaccgggaaggtgcaatctctcagatt
gcctgctgttctcatgatgatgattatgtcgctgtagctaccagtcaaggtgttgtagtt
gtttgggagttaaatcaagagcgtcgtgggaaaccagagcgaattcatgtgtcttcagaa
cacaaaggccgaaaagttactgccctctgttgggacacagctgttctgagagtctttgta
ggtgactgtgtgggcaaagtatctgccatcaaactcaacagtttgaaacaagcaaaggca
gctgctgcctttgtgatgtttcctgttcagacaatcacaacagtcgactcctgtgttgtc
cagttagattatctggatggaagattacttgtgtcttcactgactcgatgctttttgtgt
gacactgagagggaaaagttttggaaaattggaaataaggaaagggatggagaatatgga
gcttgtttcttccccggaaaatttgctgggagccagcagcctttgatctactgtgcacgc
ccaggctccagaatgtgggaagtgaactttgatggagaagtgctgagtacacaccagttc
aagaagctcttggcattgccacccctccctgtgatcactgcaagctcagagcctcggtat
gatcctacagttggatcctcccagtctttgtcattccccagactcttgcatcttagtgaa
cactgtgtgctgacttggacagaaaaaggaatttagatttttattcctcagaatgttcaa
gttcttctttggagtgaagtcaaggatattcaggatgtagctgtctataagaatgagttg
ttctgtttacactttaatgggaaaatctcacatctttccctgttgtctgtggaacgctgt
gtggaacgcctgttgaggagaggcctgtgggacctggctgctcgcacatgctgtctcttc
caaaattccatcgtcaccagcagagcaagaaaaacattgaccacagataaattagagcat
ttgaaatctcagctggaccttacaacctacagtgaactaatttctcaactggatgaattg
atcttaaaatttgagcctttggattcagcttgcagcagtagaagaagctccatttcatca
catgaaagttttagcatcttggactcgggtatttatcggatcatcagtagtagaagaggc
agtcagtccgatgaagactcttcctcccttcacagtcagaccttctcagaagatgaaagg
cttaaagaatttggctcacaccaggaagaagagcagccagagcagggctgtggtgcaagc
agaaatgaagacagtgttccccatggtctagtgacgtctgagacagagaagagtgaagct
tttctgcccttcagcatcccactgccgtttcgttctccgtctcctcgggtgtctctccag
gctgttaaagacagtgtttctagctttgtgcgtaaaactactgagaagatcggcaccttt
cacacaagcccagagctgaaagagacatttgaatctaaggatgttgaccaagtacatgaa
gaggaagtgagtgcagttacctgccctctggaggaagacactgaggaggaagaaattagt
caacttcttgaagaagacagccttcaagaactcacagcagtgacagcagaagcaatgacc
aagttactggaccctctggttttatttgaacccaaatcactaagaacagttttacgtgag
tggctttcacagttagaaaaaacatttgcctcgaaggacgtcgctggtgtttccagtacc
agcagtctacccatgaaattgaacctggatgtgcacgtccttactgagtcagaagagaga
gtattaggtgaagacagtgaagaagaaaaagggaattctttaggcattgaagaacctggt
ggtcatatagcctgtgagtctgtaagcagctttagtgagcccttgggcgacctttttcga
gtatgttcaccgtacaccatagcaaacagtcttcagaaggacctggtggagttgacaaca
ctgtgcttggaactgaatgtgttgacttctgtagtggaaagcataggtggacatgtggac
cgtgctctacagcagctctctcctgagatcctggcttgtcatttcctaaagaagtatttt
ttcctcctggacttgaaaagagcaagggagagtatcaagctaagttacaccaacaaccct
tgtgtttgggacacttttgttgaaggactgaaagaaatggcaagttctagtcctgcatac
ttggagatggaagaaggagacctgcccacagggttgcagttactggatggctcggtccct
tcagatagtcccttgttgatggcatttgccacccgattgtatgatagatttggggagtct
gcccttcgagccttcatcaagttttatccatccatctcaccttcggacatcgcacagctt
tgccgtcatcatcccgctcagtttttggcctatctagacagtctggtgaagtcaaggcct
gaagaccagtggccatccttccttgagttccttctacaaccagaatctctgagacttgac
tggctgctgttggcagtgtcccatgatgctccaccaagcacaagcacagtagatgatgaa
gggcatcccaggccacattcacacttgctttcctggggttatagtcagttgatccttctt
ctgattaaacttcctgcagactttacaatcaaagagaaaatgactgacatctgtaagtcc
tatggtttctggcctggatatctgacactctgtctggagctggagaggaggagggaggcc
ttcaccaacattgtgtatctgaatgacataagcctgatggaaggggacaatgggtggatc
cctgagaccttggaggaatggaagcttctcctacatctactacagaacaagagctcgagg
ccaactcctcacaagtcactaaatggcagcctcagtgatgggcctgtccccatcaatgtt
gagaatgtggcactcttgttagctaaggccatgggcccagatcgggcttggtcactgcta
caggaatgtggtctagcccttgagttgtcgacaaagtttaccagaacctgtgacatcctg
aggatcgctgagagaagacagagagcgctgatacaaggtatgcttgagaagtgtgaccgg
ttcctctggtcacagcaggcctag
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