Peromyscus maniculatus bairdii (prairie deer mouse): 102916934
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Entry
102916934 CDS
T11302
Symbol
Lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03030
DNA replication
pmav03410
Base excision repair
pmav03420
Nucleotide excision repair
pmav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102916934 (Lig1)
03410 Base excision repair
102916934 (Lig1)
03420 Nucleotide excision repair
102916934 (Lig1)
03430 Mismatch repair
102916934 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmav03032
]
102916934 (Lig1)
03400 DNA repair and recombination proteins [BR:
pmav03400
]
102916934 (Lig1)
Enzymes [BR:
pmav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102916934 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
102916934 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102916934 (Lig1)
DNA replication proteins [BR:
pmav03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102916934 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102916934 (Lig1)
DNA repair and recombination proteins [BR:
pmav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102916934 (Lig1)
NER (nucleotide excision repair)
Other NER factors
102916934 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
102916934 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
102916934
NCBI-ProteinID:
XP_006998199
Ensembl:
ENSPEMG00000013078
LinkDB
All DBs
Position
1:20351263..20386395
Genome browser
AA seq
937 aa
AA seq
DB search
MRKKEQERKGENSAATMQRSIMSFFQPTKEGKAKKPEKETANSIREKEPPPKVALKERNG
VVPGSDSPVKRPGRKAAQVLSSEGEEEDDAPGTPKVQKSVSDSKQSSPPSPDTYPENSPS
FSERSSPSMDISPSGFPKRRTARKQLPKRTIEDTVEEQDEDKDRAAKKRKKKEEAQTPTE
SLTEAEDVKRKEEKEGGQPIVPPEPAKSPESVPLTKTENVPVCKAGVKQEPQEEEQSKPP
ARGGKTLSSFFSPRKPAVKAEVKQEESGTPRKEETKGTLDPTNYNPSKSNYHPIEDACWK
HGQKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLSRLGPPQ
QGLELGVGDGVLLKAVAQATGRQLESVRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTTS
GVFAKFCDIARLTGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAA
LAQAVSLTPPGQEFPPAVVDAGKGKTAEARKMWLEEQSMILKQTFCEVPDLDRIIPVLLE
HGLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLESG
EVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRK
RKEVDASEIQVQVCLYAFDLIYLNGESLTRQPLSRRRQLLRENFVETEGEFVFATSLDTK
DIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVI
GAYLGRGKRAGRYGGFLLAAYDAESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRP
YVRIDGAVAPDHWLDPSVVWEVKCADLSLSPVYPAARGLVDKEKGISLRFPRFVRVREDK
QPEQATTSDQVACLYRKQSQIQNQQSSDMDSDFEDCY
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagaaagaacaagagaggaaaggggagaattctgctgccaccatgcagagaagt
attatgtcatttttccaacccacaaaagagggtaaagcaaagaagcccgagaaggagacg
gccaacagcatcagagagaaggagccccctccaaaggtggcattgaaggagaggaatgga
gtggtgcctgggagtgattctccagtgaagagaccaggaaggaaggcagcccaggtccta
agcagcgaaggggaggaggaagatgacgctcctggtacccccaaagtccagaagtccgtt
tcagactccaaacagagctctcctcccagccctgacacatatcctgagaacagtccttcc
ttctcagaaagaagcagcccctccatggacatctccccatcaggattcccgaagcgtcgc
actgctcggaagcagctcccgaaacggacaattgaggacactgtggaggagcaggatgag
gacaaagacagagcagccaagaaaaggaagaagaaagaagaagcacagaccccaacagaa
agcctcacagaggctgaagatgtaaaacggaaggaagaaaaggaggggggccagcccata
gtgccccctgagcctgcaaagtcccctgagtcagtacccctgacaaagacagagaacgtt
ccagtgtgtaaggctggcgtaaaacaggagcctcaagaagaggagcagagcaagcctcct
gccagaggtggcaagacactcagcagcttcttcagcccccggaagccagcagtgaaagct
gaagtgaaacaagaagagtcaggtactccaaggaaagaagagaccaagggaaccctggat
ccaacaaattacaatccttccaagagtaactaccatcccattgaagatgcctgctggaaa
catggccagaaggttccctttcttgctgtggcccggacatttgagaagatagaggaggtt
tctgctcggctcaagatggtggagacactgagcaacctgctgcgctccgtggtggccctg
tcacctccagacctgctccctgtcctctacctcagcctcagccgcctcgggccacctcag
cagggactagagctgggtgttggtgatggtgtcctcctcaaggcagttgcccaggccaca
ggtcgtcagctggagtccgtccgggctgaggtagcagagaagggtgatgtggggctggtg
gccgagaacagccgcagcactcagagactcatgctgcccccacctccactcaccacctct
ggagtctttgccaaattctgtgacattgcccggctcactggcagtgcttccatggccaag
aagatggacatcatcaagggcctttttgttgcctgccgccactcggaagcccggttcatt
gccaggtccctaagtggacggctgcgcctcgggctggctgagcagtcagtcttggctgca
cttgcccaggctgtgagcctcacaccccctggccaagaatttcccccagctgttgtggat
gctgggaagggcaagacagcagaggccagaaagatgtggttggaagaacaaagcatgatc
ttgaagcagaccttctgtgaggtgcctgacctggatcgaatcatccctgtgctgctggaa
catggcctggaacgtctcccagagcactgcaggctaagcccaggggtccctcttaaacca
atgctggcccatcccactcggggtgtcagtgaggtactgaaacgctttgaggaggtggac
ttcacctgcgagtacaaatatgatgggcagcgggcacagatccacgttctggaaagtgga
gaggtgaagatcttcagcaggaaccaggaagacaacacaggaaagtaccctgacatcatc
agccgcatccccaagattaaactcccctcagtgacatctttcatcctggacactgaagct
gtggcctgggaccgggaaaagaagcagatccagccattccaagtgctcaccacacgaaag
cgcaaggaagttgatgcatcggaaatacaggtgcaggtgtgtctgtatgcctttgatctc
atctacctcaacggagagtccctgactcgccagcccttgtctcgacggcggcagctgctc
cgggaaaactttgtggagacagagggtgagtttgtcttcgccacctccctggacaccaag
gacattgagcagatcgctgagttcttggagcagtcggtgaaggactcctgtgaagggctg
atggtgaagaccctggatgttgatgccacctatgagatcgccaagaggtcacacaactgg
ctcaagctgaagaaggactaccttgacggtgtgggcgacactttggaccttgtagtgatt
ggtgcctacctgggccgggggaagcgtgccggccggtatgggggcttcctgttggctgcc
tatgatgcggagagtgaagaactgcaggccatatgcaagctggggactggattcagcgat
gaagagctggaggagcatcaccagagcctacaggccctggtcttgccgaccccacgcccc
tatgtgaggattgatggagcagtggccccagaccactggctggacccaagcgtcgtgtgg
gaagtgaagtgtgcagatctctccctgtcccctgtctaccctgctgcacggggcctggtg
gacaaagagaaagggatctcccttcgtttccctcggttcgttcgcgtccgtgaagacaag
caaccagagcaggccaccaccagtgaccaggtggcctgtttgtatcggaagcagagtcag
attcagaaccagcaaagctcagacatggactccgactttgaggactgctattaa
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