Peromyscus maniculatus bairdii (prairie deer mouse): 102917232
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Entry
102917232 CDS
T11302
Symbol
Scn9a
Name
(RefSeq) sodium channel protein type 9 subunit alpha isoform X1
KO
K04841
voltage-gated sodium channel type IX alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
102917232 (Scn9a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pmav04040
]
102917232 (Scn9a)
Ion channels [BR:
pmav04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102917232 (Scn9a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
DUF6739
FraC
Motif
Other DBs
NCBI-GeneID:
102917232
NCBI-ProteinID:
XP_015851499
Ensembl:
ENSPEMG00000010302
UniProt:
A0A6J0D8U3
LinkDB
All DBs
Position
4:complement(44186121..44333061)
Genome browser
AA seq
1988 aa
AA seq
DB search
MAMLPPPGPQSFVYFTKQSLALIEQRISEEKAKEHKDEKKEDDEEGPKPSSDLEAGKQLP
FIYGDIPPGMVSEPLEDLDPYYADKKTFIVLNKGKAIFRFNATPALYMLSPFSPLRRISI
KILVHSLFSMLIMCTILTNCIFMTMSSPPDWTKNVEYTFTGIYTFESLIKILARGFCVGE
FTFLRDPWNWLDFIVIVFAYLTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQ
SVKKLSDVMILTVFCLSVFALIGLQLFMGNLKHKCFRKELEENETLDSIMNTIESEEEMK
KYFYYLEGSKDALLCGFSTDSGQCPEGYRCVKAGRNPDYGYTSFDTFSWAFLALFRLMTQ
DYWENLYQQTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYEEQNQANIEEAKQKE
LEFQQMLDRLKKEQEEAEAIAAAAAEYTSIGRSRMMGLSESSSETSRLSSKSAKERRNRR
KKKNQKKISSGEEKGDDEKLSKSESDESIKRKSCHLGVEGHHRAREKRLSTPNQSPLSIR
GSLFSARRSSRTSLFSFKGRGRDLGSETEFADDEHSIFGDNESRRGSLFVPHRPRERRSS
NISQASRSPQMLQVNGKMHSAVDCNGVVSLVDGPSALMVPNGQLLPEVIIDKATSDDSGT
TNQMRKKRLSSSYFLSEDMLNDPHLRQRAMSRASILTNTVEELEESRQKCPPWWYRFAHT
FLIWNCSPYWIKFKKFIYFIVMDPFVDLAITICIVLNTLFMAMEHHPMTDEFKNVLAVGN
LIFTGIFAAEMVLKLIAMDPYEYFQVGWNIFDSLIVTLSLVELFLADVEGLSVLRSFRLL
RVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIN
EDCTLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCLIVYMMVMVIGNLVVL
NLFLALLLSSFSSDNLTAIEEDTDANNLQIAVARIKRGINYVKQTVREFILKSFSKKPKG
SKDTKRAVDPNNKKENYISNRTLAEMSKDHIFHKEKDKMSGYGSSIDRSFMDENDYQSFI
HNPSLTVTVPIAPGESDLENMNTEELSSDSDSEYSKERRNRSSSSECSTVDNPLPGEGEE
AEAEPVNSDEPEACFTDGCVRRFPCCQVNVDSGKGKVWWTIRKTCYRIVEHSWFESFIVL
MILLSSGALAFEDIYIEKKKTIKTILEYADKIFTYIFILEMLLKWVAYGYKTYFTNAWCW
LDFLIVDVSLVTLVASTLGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPS
IMNVLLVCLIFWLIFSIMGVNLFAGKFYECVNMTDGERFPTTKVANRSECFALMNVSGNV
RWKNLKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSVNVNEQPKYEYSLYMYIYFVIF
IIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRP
GNKFQGCIFDLVTNQAFDITIMVLICLNMVTMMVEKEGQSDYMTDVLYWINVVFIILFTG
ECVLKLISLRHYYFTVGWNIFDFVVVILSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRI
LRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKKEAGINDMFN
FETFGNSMICLFQITTSAGWDGLLAPILNSAPPDCDPKKIHPGSPVEGDCGNPSVGIFYF
VSYIIISFLVVVNMYIAVILENFSVATEESTEPLSEDDFEMFYEVWEKFDPDATQFIEFC
KLSDFAAALDPPLLIAKPNKVQLIAMDLPMVSGDRIHCLDILFAFTKRVLGEGGEMDSLR
SQMEERFMSANPSKVSYEPITTTLKRKQEDVSATIIQRAYRRYRLRQNVKNISSIYIKDG
DRDDDLPNKEDIVFDNVNENSSPEKTDATASAVSPPSYDSVTKPDQEKYETDKTEKEDKG
KDGKESGE
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgctgcctcccccaggaccacagagctttgtctactttacaaagcagtctctt
gccctcattgaacaacgcatttctgaagaaaaagccaaggaacacaaagatgaaaagaaa
gaagatgatgaagaaggacccaagcccagcagtgacttggaagctggtaaacagctgccc
ttcatctatggagacattccccctgggatggtgtcggagcccctggaggacctggacccg
tactatgcagacaagaaaacttttatagtattgaacaaagggaaagcaatcttccgtttc
aatgccacacctgctttgtacatgctgtcccccttcagtcctctaagaagaatatctatt
aagattttagtgcattccttattcagcatgctaatcatgtgcacaatcctgaccaactgt
atattcatgaccatgagcagccctccagactggaccaaaaatgtagaatacacttttact
gggatatatacttttgaatcactcataaaaatccttgcaagaggcttttgtgtgggagaa
ttcaccttcctccgtgacccttggaactggctggattttatagtcattgtttttgcgtat
ttaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagtcttgaga
gctttgaaaactatttctgttatcccaggcctgaagaccatcgtgggggccctgatccag
tcagtgaagaagctgtctgacgtcatgatcctcactgtgttctgtctcagtgtctttgca
ttaattggactccagttgttcatgggcaacctaaagcataaatgtttcaggaaggaactt
gaagagaatgaaacgttagacagcatcatgaataccattgagagtgaagaagaaatgaaa
aaatatttttattacttggagggatccaaagatgctctcctttgtggcttcagcacagat
tctggtcagtgtccagaagggtacaggtgtgtgaaggctggcagaaaccctgattacggc
tacacgagcttcgacactttcagctgggccttcctggccctgtttcggctgatgacgcaa
gactactgggagaacctttaccaacagaccctgcgtgctgctggcaaaacctacatgatt
ttctttgtcgtggtgatttttctgggctccttttacctgataaacttgatcctggctgtg
gtagccatggcgtatgaggaacagaaccaggccaacatcgaagaagctaaacagaaagaa
ttagaatttcagcagatgttagaccgactcaaaaaagaacaggaagaagctgaggcgatc
gctgcagctgctgctgagtacacgagtattggacggagcaggatgatgggtctctcggag
agttcttcagaaacctccaggctgagctcaaagagtgccaaggagagaagaaacagaaga
aagaaaaagaaccagaagaagatctccagtggtgaggaaaagggcgatgacgagaaactg
tccaagtcggaatcagacgaaagcatcaaaaggaaaagctgccatctcggggtggaaggg
caccaccgtgcccgggagaagaggctgtccactcctaatcagtcaccactcagcattcgt
ggctccttgttctcggcaagacgcagcagcagaaccagcctcttcagttttaagggtaga
ggaagagatctaggatctgagactgaattcgctgatgacgaacatagcatttttggagac
aacgagagcagacggggttcactatttgtgcctcacagaccccgggaacggcgcagcagt
aacatcagccaggccagtaggtccccccaaatgctgcaggtgaacgggaagatgcacagt
gcggtggactgcaatggcgtggtgtcgcttgttgatggaccctcagccctcatggtcccc
aatggacagcttcttccagaggtgataatagataaggcaacttctgacgacagcggcaca
actaatcaaatgcgcaaaaaaagactctccagttcttacttcctgtcagaagacatgctg
aatgatccgcatctcaggcaaagagcaatgagcagggcaagcattctaaccaacactgta
gaagaacttgaagagtctagacaaaaatgtccaccatggtggtacagatttgctcacaca
tttttaatctggaattgctctccatattggataaaattcaaaaagttcatctattttatt
gtaatggatccttttgtagatcttgcaattaccatttgcatagttctaaacacattgttt
atggctatggagcaccatccaatgactgatgaattcaaaaacgtacttgcagtggggaac
ctgatctttacagggatcttcgcagctgaaatggtactgaagttaatagccatggatccc
tatgagtatttccaagtagggtggaatatttttgacagcctaattgtgacattgagtttg
gtagagcttttcctagcagatgtagaaggattatcagtcctgcggtcattcagattgctg
agagtcttcaagttggcaaaatcctggcccacactgaatatgctcattaagatcatcggt
aactcggtgggtgcgctgggcaacctgaccctggtgttggccatcattgtcttcattttt
gccgtggttggcatgcagctgtttggaaagagctacaaggagtgtgtctgcaagatcaat
gaggattgcacgctgccacgttggcacatgaacgacttcttccactccttcctgatcgtg
ttccgtgtgctgtgtggagagtggatagagaccatgtgggactgcatggaggtcgctggc
cagaccatgtgccttattgtttacatgatggtcatggtgattgggaacctcgtggtcctg
aacctgtttctggctctgttactgagttcatttagttctgacaatctcacggcaattgaa
gaagacaccgatgcaaacaacctccagattgcagtggccagaattaaaagaggaatcaat
tatgtgaaacagaccgtccgtgaatttatcttaaaatcattttccaaaaaaccaaagggt
tccaaggacacaaaacgagcagtagatccaaacaacaaaaaagaaaactatatctcaaac
cgtacactggctgagatgagcaaagatcacattttccacaaagaaaaggataaaatgagt
ggttatgggagcagtatagacagaagctttatggatgaaaatgattaccagtcctttatt
cacaatcccagcctcacggtgacagtgccaatcgcacctggggaatctgatttggaaaat
atgaacactgaagaacttagcagtgactcggacagcgagtacagcaaggagagacggaac
cgatcaagttcctctgagtgcagcacggttgataaccctctgccaggagaaggagaagaa
gcagaagccgagcctgtaaactcagatgagccagaggcgtgttttacagatggttgtgta
cggagatttccatgctgccaagttaatgtggactctgggaaagggaaagtctggtggacc
atcaggaagacctgctacaggatagttgaacatagctggtttgaaagctttattgtcctc
atgatcctgctcagcagtggagctctggcttttgaagatatatacattgaaaagaaaaag
accattaagactatactggagtatgctgacaagatattcacctacatcttcattttggaa
atgcttctaaaatgggtggcatatggatataaaacatatttcaccaatgcctggtgttgg
ttggacttcttaattgttgatgtatctctggttactttagtagccagcactcttggctac
tcagaccttggccccattaaatccctgcggacactaagggctctaagacccctaagggcc
ttgtctagatttgaaggaatgagggtggtggtcaatgcactcataggagcaatcccttcc
atcatgaatgtgctccttgtatgtcttatattctggctaatatttagcatcatgggagtc
aatctgtttgctggcaagttctatgagtgcgttaacatgacagatggggaacgatttcct
acaaccaaagttgcaaaccgttctgagtgttttgcccttatgaatgttagtggaaatgtg
cgatggaaaaacctgaaagtgaactttgataacgttgggcttggttacctgtcgctgctg
caagttgcaacattcaaaggatggatggatattatgtatgcagctgttgattctgtaaat
gtaaatgagcagccaaaatatgaatacagcctctacatgtatatttattttgtcatcttt
atcatctttgggtcgttcttcaccttgaacttgttcattggtgttatcatagataacttc
aaccaacagaaaaagaagcttggaggtcaagacatctttatgacagaagaacagaagaaa
tactacaatgcaatgaagaagctgggatccaagaaaccacaaaaaccaattcccaggcca
gggaacaaattccaaggatgtatatttgacttagtgacaaatcaagcctttgatatcacc
atcatggtgcttatttgcctcaacatggtaaccatgatggtagaaaaagaagggcaaagt
gattacatgacagatgttttgtattggatcaacgtggtcttcattatcctgttcactggg
gagtgcgtgctgaagctgatctccctcagacattactacttcactgtgggatggaacatt
tttgattttgtggtagtgatcctctccattgtaggaatgtttctggccgagatgatagag
aagtactttgtgtcccctaccctgttccgagtcatccgcctggccaggattggccgaatc
ctacgcttgatcaaaggcgccaaagggatccgcacgctgctctttgctctgatgatgtcc
cttcctgcgctgttcaacattggcctcctgcttttcctggtcatgttcatctatgccatc
tttgggatgtccaactttgcctatgttaaaaaggaagccggaattaatgacatgttcaac
tttgagacctttggcaacagcatgatctgcctgtttcaaatcaccacctctgcaggctgg
gacggactgctggctcccatcctcaacagtgcacctcctgactgtgacccaaaaaaaatt
catccaggaagtcccgtggaaggagactgtggaaacccgtctgtggggattttctacttt
gtcagctacatcatcatatccttcctggttgtggtgaacatgtacatcgccgtcatcctg
gagaacttcagcgtcgccactgaagaaagcactgaacccctgagtgaggacgactttgag
atgttctatgaggtctgggagaagttcgacccggatgccactcagttcattgagttctgc
aagctctctgactttgcggctgccctagatcctccccttctcatcgcgaagcccaacaaa
gtccagctcattgccatggatctgcccatggtgagcggagaccgcatccactgcctggac
atcttatttgcctttacaaagcgcgttttgggtgagggcggagagatggattctcttcgt
tcacaaatggaagaaaggtttatgtccgcaaatccttccaaagtgtcctatgaacctatt
acaaccacactaaaacgaaaacaagaggatgtatctgctacgatcattcagcgtgcttac
agaaggtaccgccttcggcaaaacgtcaaaaatatatcaagtatatacataaaagatgga
gacagggatgacgacttgcccaataaagaagatatagtttttgataatgttaacgagaac
tcaagtccagaaaagacagatgcaaccgcctctgccgtctctccaccttcgtatgacagt
gtcacaaagccagatcaagagaaatatgaaacagacaaaacagaaaaggaagacaagggg
aaggatgggaaagaaagcggggaatag
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