Peromyscus maniculatus bairdii (prairie deer mouse): 102917309
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Entry
102917309 CDS
T11302
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03013
Nucleocytoplasmic transport
pmav03015
mRNA surveillance pathway
pmav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102917309 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
102917309 (Ddx39b)
03015 mRNA surveillance pathway
102917309 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102917309 (Ddx39b)
03041 Spliceosome [BR:
pmav03041
]
102917309 (Ddx39b)
Enzymes [BR:
pmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102917309 (Ddx39b)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102917309 (Ddx39b)
Spliceosome [BR:
pmav03041
]
Complex C
Other components
EJC/TREX
102917309 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102917309 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102917309
NCBI-ProteinID:
XP_076414304
Ensembl:
ENSPEMG00000016905
LinkDB
All DBs
Position
21:complement(2534115..2547898)
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtggacaacgagctcttggactatgaagacgatgaagtggagaca
gcagcaggggcagatgggaccgaagctcctgccaagaaagatgtcaagggctcctacgtc
tccatccacagctccggcttccgagacttcctgctcaagccagagctgctccgggccatc
gttgactgtggctttgagcatccatccgaggtccagcatgaatgcatcccgcaggccatt
ctggggatggacgtcctgtgccaggccaagtcaggcatggggaagacggccgtgttcgtc
ttggccacactgcagcagctggagccaatcactgggcaggtgtctgtgctggtgatgtgc
cacactagggagctggcttttcagatcagcaaggaatatgagcgcttctccaagtacatg
cccaatgtcaaggtggcagtgttttttggtggtctgtctatcaagaaggatgaagaggtg
ctgaagaagaactgcccgcacattgtcgtggggacccctggccgaattctagccctggct
cgaaataagagcctgaacctcaagcacattaaacactttatcttggacgaatgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccggccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgac
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagaggtgc
atcgccctggcccagcttctagtggagcagaacttcccagccattgctatccaccgtggg
atgccccaggaggagaggctgtctcggtatcagcagttcaaggatttccagaggcggatt
cttgtggctaccaacctgtttggccgaggcatggacattgagcgtgtaaacatcgccttc
aactatgacatgccagaggactcagacacctacctgcaccgggtggccagagcaggccgg
tttggaaccaagggcttggccatcacatttgtgtcggatgagaatgatgctaagatcctc
aatgatgtgcaggaccgctttgaggttaacatcagtgagctgcctgatgagatcgacatc
tcctcctacattgaacagacgcggtag
DBGET
integrated database retrieval system
