Peromyscus maniculatus bairdii (prairie deer mouse): 102917409
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Entry
102917409 CDS
T11302
Symbol
Cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102917409 (Cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102917409 (Cnot3)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102917409 (Cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102917409 (Cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Cluap1
DUF4407
Motif
Other DBs
NCBI-GeneID:
102917409
NCBI-ProteinID:
XP_006996091
Ensembl:
ENSPEMG00000024185
LinkDB
All DBs
Position
1:5104192..5119902
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AA seq
753 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDQKQDRIEGLKRHIEKHRYH
VRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALV
ATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQS
PAKNGSKPVHSNQHPQSPAVPPTYSSGPPPATSALSSAPGNNGASTLAAPPSALGPKASP
APSHNSGTPAPYAQAVAPPNASGPSAAQPRPPSAQPSGGGSGGGSGGSSSSSSSGTGAGA
GKQNGATSYSSVVADSPAEVALSSSGGSSASSQALGPTSGPHNPAPSTSKEPSTAAPAGT
GSVASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGPLLNGPPQFSTTPEIKAPEPL
SSLKSMAERAAISSGIEDPVPTLHLTERDIILSSTSAPPTSAQPALQLSEVNIPLSLGVC
PLGPVSLTKEQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTV
EFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFE
QGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaaactccaaggtgagattgatcgctgcctcaagaaggtgtccgaa
ggtgtggagcagtttgaagatatttggcaaaagctccacaatgcagccaacgcgaaccag
aaagaaaagtatgaggctgacctaaagaaggagattaagaagctacaacggctgagggac
cagatcaagacatgggtggcatccaacgagatcaaggacaaaaggcagcttatcgaaaac
cgcaagctcattgaaacgcaaatggaacggttcaaagtcgtggaacgagagaccaaaacc
aaagcttatagcaaggagggcctgggtctggctcagaaggtggaccctgcccagaaggag
aaggaagaggttggccagtggctcacgaacaccattgacaccctaaatatgcaggtggac
cagtttgagagtgaggtggagtcactgtcggtacagacacgcaagaagaagggcgacaag
gatcagaagcaggaccggattgagggcttgaagcggcacatcgagaagcaccgctaccat
gtgcgcatgctggagaccatcctgcgcatgctggacaatgactccatcctggtcgacgcc
atccgaaagatcaaggatgacgtggagtactacgttgactcgtcccaggaccccgacttt
gaagagaacgaattcctctatgacgacctggacctcgaggacattccacaggcgctggtc
gccacctccccccccagccacagccacatggaggatgagatcttcaaccagtccagcagc
acgcccacctcaacaacttccagctctcccatcccacccagcccagctaactgcactacg
gaaaactctgaagatgataagaagagaggccgctcgacagatagtgaagtcagccagtct
ccagccaaaaacggctccaagcctgtccacagcaaccagcacccccagtccccagctgtg
ccgcccacctactcctctggccccccacctgccacttctgccttgagctccgcccctggc
aacaatggggcctctaccctagcagcacctccaagtgccctgggccccaaggccagtccg
gctcccagccacaactcgggtactcctgccccctatgcccaggctgtggccccacccaat
gccagcgggcccagcgctgcccagccccggcctcccagtgcccagccgagcggcggggga
agcggtggtggcagcggagggagcagcagcagcagcagcagtggcacaggcgcgggggct
ggcaagcagaacggtgccaccagctacagttcggttgttgcagacagccctgcggaggtg
gctctgagcagcagtgggggcagcagtgccagcagccaagccctgggccccacttcaggc
cctcataacccagctcccagcacctcgaaggaacccagtacggcagccccagcggggact
gggagtgtggcttcaggctcagggaacaactcagggggacccagcctcttggtgccactg
cctgtgaatcctcccagttctccgacacccagcttcagtgaggccaaggcagctggcccc
ctgctcaatggtcccccgcagttcagtaccaccccggagataaaggcccctgaacctctg
agctctctgaaatccatggcagaacgggcagctatcagctctggtattgaggaccctgtg
ccaacgttacacctaacagagcgagacatcatcctgagcagcacatcagcaccccccacc
tcagcccagccagccctgcagctgtcagaggtgaacataccattgtcactgggcgtgtgt
cccctggggccggtgtccctcaccaaggagcagctttaccagcaagccatggaagaggcc
gcctggcaccacatgccccacccctctgactctgagcgcattcggcagtacctcccccgg
aacccttgcccgacacccccctaccaccaccagatgccacccccacactcggacacagtg
gagttctaccagcgcctgtcaactgagacactcttcttcatcttctactatctggaggga
accaaggcacagtatttggcagccaaggccctaaagaagcagtcctggcgattccacacc
aagtacatgatgtggttccagaggcacgaggagcccaagaccatcacagatgagtttgag
cagggcacctacatctactttgactacgagaagtggggccagcggaagaaggaaggcttc
acctttgagtaccgctacctggaggaccgggacctccagtga
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