Peromyscus maniculatus bairdii (prairie deer mouse): 102917510
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Entry
102917510 CDS
T11302
Symbol
Rai1
Name
(RefSeq) retinoic acid-induced protein 1
KO
K19749
retinoic acid-induced protein 1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmav03000
]
102917510 (Rai1)
Transcription factors [BR:
pmav03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
102917510 (Rai1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
102917510
NCBI-ProteinID:
XP_076398593
Ensembl:
ENSPEMG00000001417
LinkDB
All DBs
Position
8:44488799..44591170
Genome browser
AA seq
1893 aa
AA seq
DB search
MQSFRERCGFHGKQQNYPQTSQETSRLENYRQPGQAGLSCDRQRLLAKDYYSPQPYTGYE
GGAGTPGTVATTAADKYHRGSKSLQGRPAFPGYVQDSSPYPGRYSGEEGLQTWGGPQPPP
PQPQPLPGAVSKYEENLMKKTVVPPNRQYPEQGPQLPFRTHSLHAPPPQPQQPLAYPKLQ
RQKPQNDLASPLPFPQGGHFPQHSQSFPASSTYAPAVQGGGQGAHSYKSCTAPSAQPHDR
PMSANASLAPGQRVQSLHAYQSGRLSYEQPQPPQALQGRHHTQETLHYQNLAKYQHYGQQ
GQGYCPPDTAVRTPEQYYQTFSPSSSHSPARSVGRSPSYSSTPSPLMPNLENFPYSQQPL
STGAFPTGITDHSHFMPLLNPSPTDAASSVDPQVSNCKPLQKEKLPDTLLSDLSLQSLTA
LTSQVENISNTVQQLLLSKAAMPQKKGVKSLVSRTPEQHRNQHCSPEGSGYSAEPAGTPL
SEPPSSTPQSTHAEPQDTDYLSGSEDPLERSFLYCSQARGSPARVNSNSKAKPESVSTCS
VTSPDDMSTKSDDSFQSLHSTLPLDSFSKFVAGERDCPRLLLSALAQEDLASEILGLQEA
IVEKADKAWAEASSLPKDNGKPPFSLGNHSTCLDTVAKTSWSQPGEPETLPEPLQLDKGG
STKAFSPGLFEDPSVAFATADPKKTTSPLSFGTKPLLGAATPDPTTAAFDCFPDTTTASS
VDGANPFAWPEENLGDACPRWGLHPGELTKGLEQGAKTSDSVGKADVHESPACLGFQEEH
AMGKPTAVLSGDFKQQEADGVKEEVGGLLQCPEVGKADQWLEDSRHCCSSTDFGDLPLLP
PPGRKEDLEAEEEYSSLCELLGSPEQRPSLQDPLSPKAPLMCTKEEAEEVLDTKAGWAPQ
CHLSGEPAILLGPSVGAESKVQSWFESSLSHMKPGEDGPEMERAPGSSATSEGSLAPKPN
KPAVPEVPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRVPALPKDLLLPESCTGPPQGQ
AEGAGAPGRGLSEGLPRMCTRSLTALSEPQTPGPPGLTTTPTPPDKLGGKQRAAFKSGKR
VGKPSPKAASSPSNPAALPVASDSSPMGSKTKEPDSPSIPGKDQRSMVLRSRTKPQQVFH
GKRRRPSESRIPDCRAPKKLPANNHLATAFKVSSGPPKEGRVSQRVKVPKPGTGSKLSDR
PLHTLKRKSAFMAPVPTKKRSLILRSNNGSGPDGREERAESSPGLLRRMASPQRARPRGS
GEPPPPPPLDPPAACMGLATPSSLPSAVRTKVLPPRKGRGLKLEAIVQKITSPGLKKLAC
RVAGAPPGTPRSPALPEKRSGGSPAGPEEGLGGMGPGQMLPAAPGADPLCRNAASRSLKG
KLLSKKLSSAADCPKAEAFVSPETLPSLGAARAPKKRSRKGRTGALGPSKGLLEKRPCPG
QTLILATHDRASSTQGGGEDSPSAGGKKPKTEELGLASQPPEGRPCQPQTRAQKQPGQAS
YSSYSKRKRLSRGRAKTTHASPCKGRATRRRQQQVLPLDPAEPEIRLKYISSCKRLRADS
RTPAFSPFVRVEKRDAFTTICTVVNSPGDEPKPHWKPASSAASSSSTSSSSSSSEPAGTS
LTTFPGGSAPPQPRPSLPLSSTMHLGPVVSKALSTSCLVCCLCQNPANFKDLGDLCGPYY
PEHCLPKKKPKLKEKVRLEGTFEEASLPLERTVKGLECAVGTTATAATAVTTATPTLGRL
SRPDGPADPAKQGSLRTSARGLSRRLQSCYCCDGQGDGGEEVVPADKSRKHECSKEAPAE
PGGDTQEHWVHEACAVWTSGVYLVAGKLFGLQEAVKVAVDMPCSSCHEAGATISCSYKGC
IHTYHYPCASDTGCTFVEENFTLKCPKHKRQPL
NT seq
5682 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcttttcgagaaaggtgtggtttccatggcaaacagcaaaactacccgcaaacc
tcacaggagacatcgcgcctggagaactacaggcagccaggtcaggctgggctcagctgt
gatcggcagcggctgctggccaaggactattacagcccacagccctatacaggctatgag
ggtggcgccggcacacctggcacagtggccacgacagctgcagacaagtaccaccgaggc
agcaagtccctgcaggggaggccggctttccccggctatgttcaagacagcagcccctac
ccagggcgctactctggcgaggagggtcttcagacctgggggggcccacagcccccacct
ccccaaccgcagcccctgccaggggcagtgagcaagtatgaggagaacttgatgaagaag
acggtggtgcccccaaacaggcagtaccctgagcagggcccccaacttcccttccggact
cacagcctgcatgcccccccaccacagcctcagcagcccctggcttaccccaaactccag
aggcagaaaccccagaatgaccttgcctcccctctgcccttcccccagggcggccacttt
ccccagcattctcagtccttccccgcctcctccacctacgccccagcggtgcagggcggt
gggcagggggcccactcatacaagagctgcacagcaccatccgcccagccccacgaccgg
ccgatgagtgccaatgccagcctggccccaggacagcgggtccagagtcttcacgcctac
cagtcgggccgcctcagctatgagcagccgcagccgccgcaggcacttcaaggccggcac
cacacccaggaaactctccactaccagaacctcgccaagtaccaacactatggacagcaa
ggccagggctactgtccgccggacacagctgtcaggactccagagcagtattaccagacc
ttcagccctagctccagccactcccctgcacgttctgtggggcgctctccttcctatagc
tccaccccgtcgccactgatgcccaacctggagaacttcccctacagccagcagccgctt
agtactggggccttccccacaggcatcacagaccacagccactttatgcccctgctcaat
ccctcgccgacggatgccgccagttctgtggacccccaggtcagcaactgcaagcccctg
caaaaggagaagctccccgacaccttgctgtcggacctcagcctgcagagcctcacggca
ctcacctcacaggtggaaaacatctccaacacggtgcagcagctcctgctctccaaagct
gccatgccccagaagaaaggggtcaagagcctcgtgtcgaggactccggagcagcacagg
aaccagcactgtagccccgagggcagcggttactccgctgagccggcaggcacgccgctg
tccgagccgcccagcagcaccccccagtccacgcatgccgagccacaggacactgactac
ctgagtggctccgaggaccccctcgagcgcagcttcctctactgcagccaggcccgcggc
agtcccgccagggtcaacagcaactccaaggccaagcctgagtctgtgtccacctgttct
gtgacctcacccgacgacatgtccaccaagtctgacgactctttccagagcctgcacagt
actctgcctctggacagcttctctaaattcgtggcaggcgagcgagactgcccacggctg
ctgctcagtgccctggcacaggaagatctggcctctgagatcctggggcttcaggaagcc
atcgttgagaaggctgacaaggcctgggctgaggcttccagcctgcccaaggacaatggc
aagccacccttctcactggggaaccacagcacttgcctagacactgtggccaagacgtca
tggtcacagccaggggaaccagagaccctacctgagcccttgcagctggacaagggtgga
agcaccaaggccttcagcccggggctgttcgaagacccttctgtggccttcgccaccgct
gacccgaagaagaccaccagtcccctgtcctttggcaccaagcctctgcttggggctgcc
actccagaccccaccacggccgcatttgactgctttccagacacgaccactgccagctct
gtggacggtgccaacccctttgcctggccagaggagaatctgggcgacgcttgtcctcgc
tggggcctccaccctggtgagctcaccaagggcttggagcagggcgcgaagacctcagac
agtgtcggcaaagcggatgtacacgagagccctgcctgcttgggcttccaggaagagcat
gccatggggaagcccacagcagtgctgtctggggacttcaagcagcaggaggcagacggg
gtgaaggaggaagtgggtgggttgctgcagtgccctgaggtgggcaaagctgaccagtgg
ctggaggacagccgccattgctgctcctccactgacttcggggacctgccgctgttgcca
ccgcctggccggaaggaggacctggaggccgaagaggagtactcctccctgtgtgagctg
ctggggagccctgagcagaggcccagcctgcaggacccactgtcccccaaggccccgctg
atgtgcaccaaggaggaagcagaggaggtgctggacaccaaggccggctgggccccccag
tgtcacctctctggggagcctgccatcctactgggcccctccgtgggtgccgaatcaaag
gtccagagctggtttgagtcttcactgtcacatatgaagccaggagaagatgggccagag
atggagagagccccaggtagttccgccacttcagaaggctccctggccccgaagcctaac
aagcctgctgtgcctgaggtgcccattgctaagaaagagcccgtgcccaggggtaaaagt
ttacggagccggcgggtccaccgggggctgcctgaggccgaagactctccgtgcagggta
ccagcacttcccaaagacctcttgctccccgagtcctgcacgggacccccccagggacag
gcagaaggggcgggagccccaggccgggggctgtcagaagggctccccagaatgtgtact
cgctctcttacagctctgagtgagccccaaactcctggacccccgggcctgaccaccacg
cccacacctcctgacaaactgggcggcaaacagcgagccgccttcaagtccggcaagcgg
gtaggaaaaccatcccccaaggccgcatccagccccagcaaccctgcggccctgcctgtt
gcctcggacagcagccccatgggctccaagaccaaggagccggactctcccagcatccct
ggaaaggaccagcgttccatggtcctccggtctcgcaccaaaccccagcaggtcttccat
ggcaaacggcggcggccctcggagagccggatcccggactgccgtgcccccaagaagctc
cctgccaacaaccacttagccaccgcattcaaggtctccagtgggcccccgaaggaaggc
cgggtgagccagcgggtcaaagtccccaagcccggtacagggagcaagctctcagatcgg
cctctccacacgctcaaaaggaagtcggcgttcatggctcccgtccccaccaaaaagcga
agcctcatcctgcgcagcaacaacggaagtggaccggatgggagggaggagagggccgag
agctcccctggcctcctgaggaggatggcctcaccccaaagggccaggcccagaggcagc
ggggagccgcccccacccccacccctggacccacctgctgcatgcatggggttggctaca
ccatcatccctgcccagcgctgtgaggaccaaggtgctgccaccccggaaggggcgtggc
ctcaaactggaggccatcgtacagaagatcacctcacctgggctcaagaaactcgcctgc
agagtggcaggggctcctcctgggacaccccggagcccagccctacctgagaaacgttcg
gggggcagtccagctgggccagaggagggcctaggaggaatgggccctgggcagatgctc
ccggcagctccaggagccgacccgttgtgcagaaatgcagccagcaggtccctaaaaggc
aaactcttgagtaagaaactgtcctctgctgctgactgtcccaaagctgaggccttcgtg
tccccggagaccctgccatccctaggggctgcccgggcaccgaagaaaaggagccggaaa
ggcaggaccggggccttgggaccctctaaaggcctgttggagaagcggccctgtcctggc
caaactctgatccttgctacccacgacagggccagcagcactcagggtggaggcgaggac
agccccagtgcaggaggcaagaagccaaagacagaggagctgggcctggcctcccagccc
cctgaaggccggccctgccagccccagacaagggcacagaagcagccaggccaagccagc
tacagcagctactcaaagcggaagcgcctcagccgtggccgggctaagaccacccatgct
tcgccctgtaagggacgtgccacccggagacggcagcagcaggttctgcccctggatcct
gcagagcctgaaatccgactcaaatacatttcctcttgcaagcggctgagggcagacagc
cgcaccccagccttctcgccctttgtgcgggtggagaagcgagatgcgttcaccaccata
tgcacggtcgtcaactccccgggggacgagcccaagcctcactggaagccggcctcctct
gctgcctcctcctcctccacctcctcctcctcctcctcctcagaaccagctgggacctct
ctaaccacattccctggaggctctgcgccgccgcagccgaggccctccctgcccctctcc
tccaccatgcatctggggcctgtggtgtccaaggccctgagtacctcttgccttgtctgc
tgcctctgccaaaacccggccaacttcaaggacctcggggacctctgtggcccctactac
cctgaacactgcctccccaaaaagaaaccaaaactcaaggagaaggtgcggctggaaggc
accttcgaggaggcctctctgcctctcgagagaacagtcaaaggcctggaatgtgcagtc
ggcaccacagccaccgccgccaccgccgtcaccaccgccaccccgaccctggggaggctg
tcccggcctgatggcccagccgaccctgccaagcagggctccctgcgcaccagtgcccgg
ggcctgtccaggcggttgcagagttgctattgctgtgacggtcagggggacgggggtgag
gaggtggtcccagctgacaagagccgcaaacacgagtgcagcaaagaggcccctgcagaa
cctggtggggacacccaggaacactgggtgcatgaggcttgtgccgtgtggaccagcggg
gtgtacctggtggccggaaagctctttgggctgcaggaggccgtgaaggtagctgtggac
atgccatgttccagctgtcatgaagccggggcaaccatctcgtgctcctataaaggatgc
atccacacctaccactacccttgtgccagtgacacaggttgcacattcgttgaggagaac
tttactttgaagtgccccaaacataagaggcagccgttgtaa
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