KEGG   Peromyscus maniculatus bairdii (prairie deer mouse): 102918636
Entry
102918636         CDS       T11302                                 
Symbol
Prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
pmav  Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03040  Spliceosome
pmav04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pmav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102918636 (Prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102918636 (Prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pmav03041]
    102918636 (Prpf19)
   04121 Ubiquitin system [BR:pmav04121]
    102918636 (Prpf19)
   03400 DNA repair and recombination proteins [BR:pmav03400]
    102918636 (Prpf19)
Enzymes [BR:pmav01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102918636 (Prpf19)
Spliceosome [BR:pmav03041]
 Complex B
  Other components
   Prp19 complex
    102918636 (Prpf19)
 Complex C
   Prp19-CDC5 complex
    102918636 (Prpf19)
Ubiquitin system [BR:pmav04121]
 Ubiquitin ligases (E3)
  U-box type E3
   102918636 (Prpf19)
DNA repair and recombination proteins [BR:pmav03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    102918636 (Prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_WDHD1_1st Prp19 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML DSE1_N Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_Aladin Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_NOL10_N Beta-prop_WDR41 CFAP251_N ASA1 NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_Vps41 U-box PEP5_VPS11_N Beta-prop_DCAF4 PAC11 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_SPT8 DNAI3_WD Beta-prop_ACSF4 Beta-prop_Nup120_160 eIF2A PROPPIN Cytochrom_D1 RMC1_N Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N zf-Nse Beta-prop_LRRK2 TRM82_WD Alpha_humulene_synt DUF1830 CCDC13 ATG16 Cep57_MT_bd
Other DBs
NCBI-GeneID: 102918636
NCBI-ProteinID: XP_006993891
Ensembl: ENSPEMG00000019270
LinkDB
Position
1:163103103..163122364
AA seq 504 aa
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPVNNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQKLQDKA
TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG
GADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNTSCVQ
VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP
DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD
LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG
VAFGHHAKFIASTGMDRSLKFYSL
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtccctgatctgctcgatctccaacgaagtgcccgagcacccgtgcgtgtcccccgtc
tccaatcatgtgtatgagcggcggctcattgagaagtacatagcagagaacggcacagac
cctgtcaacaaccagcccctctcggaggagcagctcatcgacatcaaagttgctcaccca
atccggcccaagcctccctctgccaccagcatcccagccattctgaaagccttgcaggat
gagtgggatgcagtcatgctgcacagcttcactcttcgccagcagctgcagacaacccgc
caggagctgtcccatgctctgtaccaacacgatgctgcctgccgagtcattgcccgtctc
accaaggaagtcactgctgctcgagaagctctggctactctgaaaccacaggctggtctt
attgtacctcaggccgtgccaagctcacagcccagtgtggtgggtgcaggagagcccatg
gatttgggtgagctggtgggcatgacccctgaaattatccagaagcttcaagacaaggct
actgtgctaaccacggagcgtaagaagagaggaaagactgtgcctgaggagctggtgaaa
cctgaggagctcagcaagtaccggcaggtggcatcccatgtggggctacacagtgctagc
attcctgggatccttgctctggacctctgtccttcggacaccaacaagattctcactggt
ggggcagataaaaacgttgttgtctttgataagagtactgagcaaatcctggccactctc
aaaggccataccaagaaggtcaccagtgtggtgtttcatccttctcaggaactggtgttt
tctgcatccccagatgcgactatcaggatttggtcggtcccaaacacttcttgtgtacag
gttgttcgggcccatgagagcgcagtgacaggcctcagcctccatgctactggagactat
ctcctgagctcctctgatgatcagtactgggccttctctgacatccagacagggcgtgtg
ctcaccaaggtgacagatgagacttctggctgctctcttacctgtgcgcagttccaccct
gatgggctcatctttggaacaggaaccatggactcccagatcaagatctgggacttgaag
gagcgtaccaatgtggccaactttcctggccactctggccccattaccagcatcgccttc
tctgagaatgggtactacctggccacagcggctgatgactcttcagtcaagctctgggac
ttacgcaagctgaagaacttcaagacactgcagctggacaacaactttgaggtgaagtca
ctgatctttgaccagagtggtacctacctggctcttgggggtacagatgtccagatctac
atctgcaaacagtggacagagattcttcactttacagagcacagtggcctgaccactgga
gtggcctttgggcaccacgccaagttcatcgcttcaaccggcatggacaggagcctcaaa
ttctacagtctgtag

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