Peromyscus maniculatus bairdii (prairie deer mouse): 102918669
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Entry
102918669 CDS
T11302
Symbol
Col7a1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04382
Cornified envelope formation
pmav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102918669 (Col7a1)
09158 Development and regeneration
04382 Cornified envelope formation
102918669 (Col7a1)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102918669
NCBI-ProteinID:
XP_076433188
LinkDB
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Position
7:107014998..107048493
Genome browser
AA seq
2944 aa
AA seq
DB search
MRLRLLVAALCAAEILVGAPGVWAQPRDRVTCTRLYAADIVFLLDGSSSIGRSNFREVRG
FLEGLVLPFSGAASAQGVRFATVQYSDDPQTEFGLDALGSGGDTIRAIRELSYKGGNTRT
GAALHHVADHVFLPHLTRPGIPKVCILITDGKSQDLVDTAAQKLKGQGVKLFAVGIKNAD
PEELKRIASQPTSDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVTLPPDGTSSGPRDLV
LSEPSSQSLRIQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNVPAGETSMRLQGLRP
QTEYQVTVVALYANSIGEAVSGTARTTAEEGLELSIQNITSHSLLVAWRRVPGATGYRVA
WRDLRGGVTQQQDMSPGQGSAFLYHLEPGTDYEVTVSALFGRSVGPPTSLTARTDPSVEQ
TLNAVILSPTSILLSWKLVPEARGYRLEWRREGGLEPLQKVVLPSDVTRHQLDGLQPGTE
YRLTLYTLLEGREVATPATVVPTGPERLASEVMNLQAVELPGQRVRVSWNPVPRATEYRV
TVRSTQGVERTLLLPGSQTAFDLDDVRAGIGYTVRVSARVGTHEGDASVLTIRRDPETQL
TVPGLRVVASDATRIRVAWGPVPGASGFRISWRTGSGPESSQTVTPDSTATDILGLQPGT
SYHVAVSALRGREEGPPAVIVARTDPLGPVRRVHLTQAGSSSISIAWTGVPGATGYRVSW
HSGHGPEKSQLVSGEATVAEIDGLAPDTEYTVRVRTHVAGVDGAPASVVVRTAPEPVGSV
SKLQILNASSDVLRVTWVGVPGATAYRLAWGRSEGGPTRHQILPGNKDSAEIRGLEGGVS
YSVRVTALVGDREGAPVSIVVTTPPEAPTSLETLQVVQRGEHSLRLHWERVPGALGYRLR
WQPEGGQEQSLILRPESNSYNLDGLEPATLYHVWLSVLGQTGEGPPRKVSAHTEPSRVLS
TELRVVDTSIDSVTLAWTPVPEASSYILSWRPLGGTGQEVPGAPQTLPGISSSHRVTGLE
PGISYVFSLAPIQRGVRGPEVSVTQKPVCPHGQMDVVFLLHTTRDNAHNAEAVRRVLERL
VSALGPLGPHAAQVGLLTYSHRPSPLFPLNSSHDLGIILQKIRDIPYVDPSGNNLGTAVI
TAHSHLLAPNAPGRRHQVPGIMVLLVDEPLRGDIFSPIREVQASGIKVMILGLAGADPEQ
LRRLAPGMDPIQNFFAMDNGPSLDRATSDLAIALCQAAVTTQPQPEPCAVHCPKGQKGEP
GVTGLQGQAGPPGPPGLPGRTGAPGPQGPPGSTQAKGERGFPGPEGPPGSPGLAGVPGSP
GTKGSPGWPGPRGEPGERGPRGPKGEPGEPGKVNGGKEPGLPGKKGDPGPSGPAGPRGPL
GEPGPRGAPGIPGTSVKGDKGDRGERGPPGPGIGGAGQGEPGLPGLPGSPGPQGPAGRTG
DKGEKGDCEDGAPGLPGQPGAPGEPGLRGAPGITGPKGDRGQTGTPGEPGEKGERGPPGP
VGSQGLPGVAGHPGVEGPEGPPGPAGRRGEKGEPGRPGDPAVGPGGAGAKGEKGDAGLPG
PRGAAGLRGEQGPPGLGLPGDPGPKGDPGDRGPVGLTGRAGPTGDSGPPGEKGDPGRPGP
PGPIGPRGRDGEAGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGR
NGSPGPSGPKGDRGEPGPPGPPGRLVDAGIGPRDKGEPGQEGPRGPKGDPGPPGASGERG
MDGLRGPPGPQGDPGVRGPAGDKGDRGPPGLDGRSGVDGKPGAAGPPGPHGASGKAGDPG
RDGLPGLRGEHGPPGPPGVPGVPGKAGEDGKPGLTGKNGEPGDPGEDGRKGEKGDSGAPG
REGPDGPKGERGAPGNPGLQGPPGLPGQVGPPGQGFPGVPGSAGPKGDRGETGSKGEQGL
PGERGLRGEPGSLPNAERLLETVGIKVSALRDIVETWGESSGSFLPVPERRPGPKGDPGE
RGPPGKEGSIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPG
RAGGAGEAGRPGERGERGEKGDRGEQGRDGLPGLPGPPGPPGPKVAIDEAGPGPSREQGP
PGLKGAKGEPGSDGDRGPKGDRGVPGAKGDQGEPGKRGHDGSPGLPGERGVAGPEGKPGL
QGPRGNPGPAGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPTGAVGLP
GPPGPSGLVGPQGSPGLPGQVGETGKPGPPGRDGTSGKDGDRGGPGVPGLPGLPGPVGPK
GEPGTVGAPGQAVVGPPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGRAGE
PGDPGEDGQKGSPGLKGLKGEPGIGVQGPPGPAGPPGMKGDSGSPGAPGVPGVVGFPGQP
GPRGEMGQPGPVGERGLAGPPGREGAPGPLGPPGPPGSGGAPGTSGLKGDKGDPGAGLPG
PRGERGEPGVRGEDGHPGQEGPRGLMGPPGSRGDRGEKGDAGTAGPKGDKGDSAVIEGPP
GPRGAKGDLGERGPRGMDGDKGPRGDSGNPGDKGSKGEPGDKGSTGSIGVRGLTGPKGEP
GAAGIPGEPGAPGKDGAPGFRGDKGDIGFTGPRGIKGERGMKGACGFDGDKGDKGEAGFP
GRPGLAGRKGDAGEPGIPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGPPGVG
GFPGPRGNDGSSGPPGPPGGVGPKGPEGLQGQKGERGPPGESVVGAPGTPGAPGERGEQG
RPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLSSYAADTAGPQLH
PVPVLRVSHVEEEGRVPPEDDDDFSEYSVYSVEDYQDPEVPWDGDGDIKGWDQRGSDPCS
LPLDEGSCTAYTLRWYHRAVPGGTACHPFVYGGCGGNANRFGTREACERRCPPQVVHSQK
TGAA
NT seq
8835 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcggctcctggtcgctgcgctctgcgctgccgagatcctggtgggggcgccc
ggagtgtgggcccagcccagagatagagtgacctgcacgcgcctttacgccgctgacatc
gtgttcttactcgatggctcttcatccattggccgcagcaacttccgcgaagtgcgtgga
ttcctggaggggctggtactgcctttctcaggggcagccagtgcgcagggtgtccgattt
gccacagtgcagtacagtgatgacccacaaacagaatttggtctggatgcactcggctct
ggaggtgacaccatccgtgccatccgggaactcagctacaagggtggaaacacccgtaca
ggggccgctctccaccatgttgctgaccacgtcttcttgccccacctaacacgacctggc
atccccaaggtctgcatcctgatcacagatgggaagtcccaagacttagtggacacagct
gcccagaaactcaaggggcagggagtgaagctctttgccgtgggaatcaagaatgctgac
cccgaggagctgaagcggattgcgtcacagccaaccagtgacttcttcttcttcgtcaat
gacttcagcatcttgaggaccctattgcccctcatttcccggagggtgtgtacaactgct
ggtggtgtccctgtgactctgcctccggatggcacttcatctgggccccgggacctggtg
ctgtccgagccaagtagtcaatccttgcgaatacagtggacagcggctagtggccctgtg
accggctacaaggttcagtacacccctctgacagggctgggacagccactgccaagtgag
cgacaggaggtgaacgtcccagccggtgagaccagcatgcgactacaaggtctccggcca
caaactgaataccaagtgactgtggttgccctctacgccaacagcatcggggaggccgtg
agtgggacagctcggaccactgccgaggaagggctggagctgagcatccagaacatcacg
tcccacagcctcctggtggcctggaggagagtgccaggtgccactggttaccgtgtagca
tggcgggacctccgtggtggggtgacacagcagcaggacatgagccctggacaggggtca
gcgtttttatatcacttggagcctggcacagactacgaggtgaccgtgagcgccctattt
ggccgcagcgtggggcctcccacttctctgactgcccgcactgatccctcggttgagcag
accctgaacgctgtcatcctgagccccacatccatcctcctgtcctggaagttggtgccg
gaggcccgtggctaccggttggagtggcgtcgtgagggtggcttggaaccactacagaaa
gtggtgctgccctctgatgtgacccgccaccagttggatgggttgcagcccggcactgag
tatcgcctcacgctctacactctgctggagggccgggaggtggccactcctgcaaccgtg
gttcctactgggccagagcggctggccagtgaggtgatgaatttacaagccgtagaactg
ccggggcagcgcgtgcgagtgtcttggaaccccgtccccagggccactgagtaccgcgtc
accgtgcgtagcacccagggggttgagcggaccctgttgcttcctgggagtcagacagcc
tttgacttagatgatgttcgagctgggattggctacacagtgcgggtgtctgcccgagtg
ggcactcacgagggtgacgccagcgtcctcaccatccgcagagatccagaaacccagctt
actgttccaggactgcgggttgtggcatcagatgccacaagaatcagagtggcctgggga
cccgtccctggagccagtggatttcggattagctggaggacgggcagtggtccagagtcc
agccagacagtgaccccggactctactgccaccgacatcctggggctgcagcctggaacg
tcttatcacgtggctgtgtcagcacttcgagggagagaggagggcccccctgcggtcatc
gtggctcgaactgatcccctgggcccggtgaggagagtccacctgactcaggccggcagc
tcgtctatcagcattgcctggaccggggttcctggggccacaggatacagggtttcctgg
cactcaggccacggtccagagaaatctcagttggtttctggggaagccacagtggctgaa
atcgatgggctggcgccagacacggagtataccgtgcgtgtgagaacccatgtagctggt
gtggatggggcccctgcctctgtggttgtgaggactgcccccgagcccgtgggcagtgtg
tcaaaactgcagatccttaacgcttccagtgatgttctacgggtcacttgggtaggggtc
ccgggagccacagcctatagactggcgtggggacggagtgaaggtggccctacgagacac
cagatactccctggaaacaaggactctgcagagatccgaggtctcgaaggcggggtcagc
tactcagtgagggtgacagcgcttgttggggaccgcgagggtgcaccggtctccattgtc
gtcaccacaccgcccgaggctccgacatctctggagactcttcaagtagtgcagcgtggg
gaacactccttgaggctgcattgggagcgggtacccggagcactgggctaccgtctgcgt
tggcaacctgaaggtggccaggaacagtccctaatcttgagacctgagtctaacagctac
aacctggatggactggagccagcaacactgtaccatgtatggctgagtgtcctggggcag
actggagaaggaccccctaggaaggtgtctgcacacactgagccctctcgtgtcctgagc
actgaactacgtgtggtggacacctctattgactcagtgactttggcctggaccccagtg
cctgaggcttccagctacatcttgtcctggaggccactgggaggaactggccaggaagtg
cctggggctccacagacgctgccagggatctcaagctcccacagggtgacagggttagaa
cctggtatttcctatgtcttctctctggcacctatccagaggggtgtacgaggtcctgag
gtctctgtcacacaaaagccagtgtgtccccatggccagatggatgtggtgttcctgctg
cataccactcgagacaatgctcacaatgcagaggctgtaaggagggtcctggagaggctg
gtgtctgcactcgggcctcttggtccacacgctgctcaggttggcctgctgacctacagt
caccggccctccccattgttcccactgaatagttcccacgatcttggcatcatcttgcaa
aagatccgggacatcccgtatgtagacccaagtggaaacaacctaggcacagctgtgatc
acagctcacagccacctcttggcacccaacgctcctggtcgccgtcatcaagtgccaggg
ataatggtcctattagtggacgagccactgagaggggacatatttagtcccattcgtgag
gtccaggcttctgggatcaaggtgatgatattgggcttggcgggcgctgacccagagcag
ctgcgacgcttggcaccaggcatggaccccatccagaacttctttgccatggataacggc
ccaagcttggaccgagcaaccagtgatctggcaatagccctgtgtcaggcagctgtgacc
acacagccacaaccggagccctgtgctgtgcattgtccaaagggtcagaagggggagcct
ggagtgacgggactgcaaggacaagctggacctcctggtccccctggtctcccgggcagg
accggtgctcccggcccacagggcccccctggaagtacccaggcaaaaggcgagaggggc
tttcctggcccagaagggcctccaggcagtcccggccttgctggtgttcctgggtctcct
ggcactaagggctccccggggtggcccggccctcgtggggaaccgggggagcgagggcct
cgaggcccaaagggggagccgggggagcctgggaaagtcaatggaggtaaagagccaggg
cttcccggaaagaaaggagaccctggaccttcgggccccgccggacctcgtggccctttg
ggggaaccaggaccccgtggtgccccagggattcctggaacatcagtgaagggtgacaaa
ggtgatcgtggggaacggggtcccccaggaccagggattggtggcgctggacaaggcgag
cctggacttccaggtcttcctggaagccctggaccccaaggcccagctggtcgcactgga
gataagggagagaagggtgactgtgaggatggagcccccggccttccaggacaacctggg
gccccaggtgaaccgggcctacggggagctcctggaattactgggcccaaaggtgaccgg
ggacagacggggaccccgggtgagcctggagaaaagggtgaacggggaccacctggtcca
gtgggatcccaggggctccccggggttgctggacatccgggagtggaaggtcctgagggg
ccaccaggacctgccggccgcagaggagaaaagggagagcctggtcgccctggggatcct
gcagtgggtcctggtggtgctggagccaaaggagaaaagggagatgctgggctccctggg
cccagaggagcggctggactcagaggggaacaaggcccacccgggttgggtcttcctgga
gaccctggccccaaaggagaccctggagaccggggtcccgtaggcctcactggcagagca
ggacccacaggtgactcggggcctcctggagagaagggagatcctgggcgacctggcccc
ccaggacctattggcccccgaggaagagatggtgaagctggagagaaaggcgacgagggt
cccccgggtgacccaggtttgcctggaaaagcaggcgagcgtggcctccggggggcaccc
ggggtccgggggcctgtgggtgagaaaggcgatcagggagaccctggagaagatggacgg
aatggcagccctggaccatctggacccaagggtgaccgtggagagccgggccccccgggt
ccccctggacggctggtggatgcaggaattggaccccgagacaagggagagcctgggcag
gaaggtcctcgaggacccaagggtgaccctggcccccctggagcctctggagagaggggc
atggatgggcttcggggaccccccggcccacagggagacccaggcgtccgaggccctgca
ggggacaagggtgatcggggccctccagggctggatggccggagtggggtggatgggaag
ccaggggcagctggccccccagggccacatggcgcttcaggcaaagctggggaccctggg
agagatgggcttccaggccttcgaggagaacatggcccccctggtccccctggcgttcct
ggagtaccgggaaaggcaggcgaggatggcaaaccgggcctgactgggaaaaacggagag
cctggagaccctggagaggatggaaggaagggggaaaagggagattctggtgcccctgga
agagaaggtcctgatggtcccaagggtgaacgtggagctcctggtaatcctggactccag
ggtcctccgggtctcccaggacaggtcggtcctcctggccagggtttccctggtgtccca
ggaagtgcgggtcccaagggtgaccgtggagagaccgggtccaaaggggagcagggcctt
cctggagaacgtggcctccgcggagaacctgggagcttgccgaatgcagagaggctgctg
gaaactgttggcatcaaggtgtcggccttgcgggacattgtggagacctggggtgagagt
tctggcagcttcctgcccgtgcctgagcggagacctggtcccaagggggatcctggtgag
cgaggccctccgggcaaggagggctccattggctttcctggagaacgtgggctgaaggga
gatcgtggagaccctggcccgcagggacctcctggcttggccctcggggagaggggccca
cctggaccacctggccttgctggggaacctggaaagcctggcattcctggactcccgggc
cgggctggtggtgctggggaggcaggaaggccaggagagaggggcgaacgcggagagaaa
ggagaccgtggagaacagggcagagatggccttcctggcctccctggaccacctggcccc
cctggccccaaggtggccattgatgaggcaggtcctggaccctctagagaacagggaccc
cctggactcaagggtgctaagggggagccaggcagtgatggtgaccgtggacccaaagga
gacaggggtgtgccaggagccaaaggagaccagggagagcctgggaagaggggtcatgat
ggcagcccgggtcttccgggagagcgcggtgtggctgggcctgaagggaagccgggtctg
cagggcccgagggggaaccctggcccagcgggtggccatggagaccctggaccaccgggt
gccccgggtctcgctggccctgcaggaccccagggaccttcaggcctgaagggggaacct
ggagagacaggacccccaggacggggtctgcccggacctactggagctgtgggacttcct
ggccctcctggcccttcaggccttgtggggccacaaggatcaccaggtttacctggacaa
gtgggggagacggggaagccaggccccccaggtcgtgatggtaccagtggaaaggatgga
gacaggggaggtcctggtgtgccagggttaccaggtctgcctggccctgttggacctaaa
ggagaacctgggactgtgggggcccctggacaggcggtggtcgggccccctggagcaaaa
ggggagaagggagccccaggagaccttgctggagccctgctgggtgagccgggagccaaa
ggcgacagaggattgccaggaccacggggtgagaaaggcgaagctggccgtgcaggagag
cctggagaccctggggaagatggtcaaaaagggtccccaggactcaaaggtctcaagggt
gagccaggaattggggttcagggcccccctgggccagctggtcctccaggtatgaaggga
gactcgggctcccctggtgcccctggggttcctggtgttgttgggttccctggtcagcca
gggcctcgaggagagatgggccagccagggcctgtcggggaacggggtctggcaggccct
ccagggagagaaggtgccccaggtcccttggggccacctggaccaccagggtcaggggga
gcacccggcacctctggactcaaaggagacaagggagacccaggagcagggctgcccggg
ccccgaggcgagcgtggtgagccaggtgtccggggtgaagacggccaccctggccaggaa
gggcctcgaggactcatggggcctcctggcagccggggagatcgaggggagaagggtgac
gctgggaccgcgggaccaaagggtgacaagggtgactcagccgtgattgaggggcctcca
gggccacgaggtgccaaaggggacctgggtgagcgagggcctcgaggcatggacggtgac
aaaggacctcggggagacagtgggaatcctggcgacaagggctccaaaggggagccaggg
gacaaaggttcaactggatcaattggggttcgaggactcacaggacccaagggggaacca
ggtgctgcagggatccctggtgagccgggagccccaggaaaggatggagcccctggtttc
cgaggagacaaaggagacattggctttacgggtccccggggcatcaagggtgaaagagga
atgaagggggcctgtggctttgatggggacaaaggagacaagggagaagctggttttcct
ggccgccccgggttggcaggacggaaaggcgacgcaggggagcctggtattccgggtcag
tctggggctcctggcaaagagggcctgattggtcccaagggtgacagaggttttgatggg
cagccaggtcccaagggtgaccaaggcgagaaaggggagcgggggcccccaggagttggg
ggcttcccaggtcccagggggaatgatggctctagcggtcccccagggccacctggtggt
gttggtcccaaaggccctgaaggacttcagggtcagaagggcgagcgaggtccccctgga
gagagtgtggtgggggctcctggtactcctggcgcccccggtgagagaggagagcagggg
cgaccaggacctgctggccctcgtggggagaagggagaagctgcgctgaccgaggatgac
atccggggctttgtgcgtcaggagatgagtcagcattgtgcctgccagggccagtttatt
gcatctggatcacgacccctctccagctacgctgcggacacagctggccctcagcttcac
cctgtgcctgtgctccgggtctctcatgtagaggaggaaggccgggtaccccctgaagat
gatgacgacttctctgaatactcagtgtattctgtggaggactaccaggacccagaagtt
ccttgggatggcgatggtgatatcaagggctgggaccagagaggttcagacccctgctcc
ctaccactggatgagggctcctgtactgcctacaccctgcgctggtaccatcgggctgtg
cctggtggcacagcctgtcacccctttgtctacggtggctgcggagggaatgccaaccgt
tttggaacccgtgaggcatgtgagcgccgctgcccaccccaagtggtccacagccagaaa
acaggtgctgcctag
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integrated database retrieval system
