Peromyscus maniculatus bairdii (prairie deer mouse): 102920021
Help
Entry
102920021 CDS
T11302
Symbol
Atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04136
Autophagy - other
pmav04140
Autophagy - animal
pmav04211
Longevity regulating pathway
pmav05010
Alzheimer disease
pmav05014
Amyotrophic lateral sclerosis
pmav05016
Huntington disease
pmav05017
Spinocerebellar ataxia
pmav05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102920021 (Atg13)
04136 Autophagy - other
102920021 (Atg13)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
102920021 (Atg13)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
102920021 (Atg13)
05014 Amyotrophic lateral sclerosis
102920021 (Atg13)
05016 Huntington disease
102920021 (Atg13)
05017 Spinocerebellar ataxia
102920021 (Atg13)
05022 Pathways of neurodegeneration - multiple diseases
102920021 (Atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmav04131
]
102920021 (Atg13)
03029 Mitochondrial biogenesis [BR:
pmav03029
]
102920021 (Atg13)
Membrane trafficking [BR:
pmav04131
]
Autophagy
Autophagosome formation proteins
ULK complex
102920021 (Atg13)
Atg1 complex
102920021 (Atg13)
Mitochondrial biogenesis [BR:
pmav03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
102920021 (Atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
102920021
NCBI-ProteinID:
XP_042131638
Ensembl:
ENSPEMG00000017021
LinkDB
All DBs
Position
4:complement(68666077..68707816)
Genome browser
AA seq
549 aa
AA seq
DB search
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALSGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTGEDAGVT
YPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSSR
LSYQPAVLGLGSADLAYPVVFAAGLNTTHTHQLMVPGKEGGVPLAPNQPAHGTQADQERL
VTHTPSDGTHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTLT
SLDIPFAMFAPKNLELEDADPMVNPPDSPETTSPLHGSLHSDGSSGGSSGNTHDDFVMID
FKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVRE
FDAFVETLQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgatctcaattcccaggacagaaaggacctggacaagtttattaagtttttt
gcactcaagactgtccaagtaattgtccaggctcgacttggtgaaaagatttgcacccgc
tcatcttcttccccaacgggttcagattggttcaatttagcaatcaaagacatcccagaa
gtaacacatgaagcaaagaaggccctgtcagggcagctgcctgctgtggggcgctctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagttggaaatttggtgt
cttgaaatgaatgaaaagtgtgacaaagaaatcaaagtttcctacactgtatacaacaga
ctgtccctgctgctgaagtctcttctcgctataacgagggtgacaccagcctacagactc
tccagaaaacaagggcatgaatatgtaatactgtacaggatttattttggggaagttcaa
ctgaatggtttaggagaaggcttccagacagttcgagttggaacagtgggcacccctgtc
ggcaccatcactctttcctgcgcttacaggattaatttggcattcatgtctaccaggcaa
tttgagaggacaccacctatcatggggattatcattgatcactttgttgaccgtccctat
cccagctcctctcccatgcacccctgcaattacagaactggtgaggatgctggagtcacg
tacccatcagtggaagactctcaggaagtgtgtaccacctccttttccacctcccctccc
tcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtgacg
gacactctgagggtccccatggcaggactggccttttcccatcaactctcaagctctcgc
ctttcctatcagcctgctgtcctgggccttggatcggctgacctggcttatccagtagtg
tttgctgctggcttaaacactacacacactcaccagctgatggttccagggaaggaaggt
ggggtacctcttgctcccaaccagcctgctcacggcacccaggctgaccaggagagactg
gtgactcacacaccttctgatgggacccactgtgctgccacgccctctagcagtgaggac
actgagactgtgtctaacagcagtgagggacgggcctcaccccatgacgtcttggagact
atctttgtccgaaaagtgggagcatttgtcaacaaacccatcaaccaggtgaccctgaca
agtttggacataccctttgccatgtttgctcccaagaatttggagctggaggatgctgat
cctatggtgaaccccccggactctccagagaccacgtctcccctccacggcagcctgcac
tcagatggctccagcgggggcagcagtggcaatacacatgacgactttgtaatgattgac
tttaaacctgctttttctaaagacgacattcttccgatggacttggggaccttttaccgt
gaatttcagaatccccctcagctgagcagcctctccatagatattggagcccagtctatg
gcggaagacttggattccttaccagagaagctggctgtgcatgagaagaatgtccgagaa
tttgatgcctttgttgaaaccctgcagtaa
DBGET
integrated database retrieval system
