Peromyscus maniculatus bairdii (prairie deer mouse): 102920544
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Entry
102920544 CDS
T11302
Symbol
Thoc2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03013
Nucleocytoplasmic transport
pmav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102920544 (Thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
102920544 (Thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102920544 (Thoc2)
03041 Spliceosome [BR:
pmav03041
]
102920544 (Thoc2)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
102920544 (Thoc2)
Spliceosome [BR:
pmav03041
]
Complex C
Other components
EJC/TREX
102920544 (Thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102920544 (Thoc2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
102920544
NCBI-ProteinID:
XP_015855627
Ensembl:
ENSPEMG00000007626
LinkDB
All DBs
Position
X:32682317..32806673
Genome browser
AA seq
1621 aa
AA seq
DB search
MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASSVLNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGNITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNSIMDEYK
REIVEAKQIVRKLTMVVLSTEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQLPPYYAASHRLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQ
VESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKERTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKEKMKHDDTTISNWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTTEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVNKICQEEKEKRPDLYALAMGYWGLLKCRKSHMIPENEFHHKDPPPRNAVASV
QNGPGGGTSSSSLGSASKSDESGTEETDKPRERSQCGTKAVNKASSTTPKGNSSNGNSGS
NSNKAVKENDKEKVKEKDKEKKEKTPSTTPEARVLGKDSKEKPKEERPNKDEKARETKER
TPKSDKEKEKFKKEEKAKDEKFKTTIPSVESKSTQEREREKEPSRERDVAKEMKSKENVK
GGEKTPVSGSLKSPVPRSDISESEREQKRRKIDTHPSPSHSSTVKVTDILPKVPLGSENY
ASSPVISIHFLQDSLIDLKESSSKLYINHTPPPLSKSKEREMDKKDLDKSRERSREREKK
DEKDRKERKRDHSNNDREVPPDITKRRKEENGTMGVSKHKSESPCESQYPNEKDKEKNKS
KSSGKEKGSSDSFKSEKMDKISSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKH
R
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcagcggtggtggttcccgcagagtggataaagaactgggagaaatcaggg
agaggcgaatttttgcatttatgccggattctcagtgaaaataaaagccatgacagttcg
acttacagagattttcaacaagctctctatgagttgtcataccatgtcattaaaggaaat
ttaaagcatgaacaggcatctagtgttcttaatgacattagcgaatttcgtgaggatatg
ccttctattcttgctgatgtattctgcatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctgaaggaacgtttggacccagaaactttggagtcattagggctaatcaagcag
tcacagcagttcaatcaaaaatcagttaaaatcaagacaaaactcttctataagcagcaa
aaattcaatttattaagagaagagaatgaaggttatgccaagctgattgctgaattgggg
caagatttatctggaaatattactagcgatttaatattagaaaatatcaagtctttaata
ggatgctttaatctggatcccaatagagttttggatgtaattttagaagtgtttgaatgc
aggccagaacatgatgacttctttatatctttattagaatcttacatgagtatgtgtgaa
ccacaaacactgtgtcatattcttggattcaaattcaagttttaccaggaaccaagtggt
gagactccctcgtctttatacagagttgcagcagtgcttctgcaatttaatctcattgat
ttagacgatctttatgtacaccttcttccagctgataatagcattatggatgaatacaaa
cgagaaattgtggaagctaagcaaattgtaagaaaactcacaatggttgtattgtctact
gagaaacttgatgaacgagacaaagaaaaggacaaagatgatgaaaaagtagagaagcca
cctgacaaccaaaaacttggtttgttggaagccttgttaaagatcggtgactggcagcat
gcacagaacatcatggatcagttgcctccatactatgcagcttcacatagactaatagct
cttgctatttgcaaactcattcacataactgttgagcctctctaccgaagagttggtgtt
cctaaaggtgctaaaggctcacctgttagtgctttgcaaaacaagagagcaccaaagcag
gtagagagctttgaagacttgaggagggatgtattcaacatgttctgttaccttggtcct
cacctttctcacgatcccattttatttgcaaaagtcgtgcgtataggcaagtcatttatg
aaagagtttcagtctgatggaagcaaacaagaagataaagaaagaacggaagttatcctt
agctgtttgcttagcattactgaccaggtattacttccatctctttctttgatggactgc
aatgcttgcatgtctgaggaactatggggaatgtttaagacatttccctatcagcataga
taccgtttgtatggccagtggaagaatgaaacttataacagtcacccacttttagtaaaa
gttaaagctcaaacaatagacagagccaagtatatcatgaagcgtctaaccaaggaaaat
gtgaagccttcaggaagacaaattggcaagttgagccacagtaatccaaccattttgttt
gattatatcttgtcacaaatacagaaatatgataacttaataacacctgtagtagattca
ttgaaatacctcacttcattgaattatgatgtcttggcctattgtatcattgaagcttta
gctaatccagaaaaggagaaaatgaaacatgatgacacaaccatctctaactggcttcag
agtctggctagtttctgtggtgcagtgttccgtaaatacccgattgatcttgctggtctt
cttcagtatgtagccaatcagttaaaggcaggcaaaagctttgatctattaatattgaaa
gaagtggtacaaaaaatggcaggaatcgaaattacggaggaaatgacaacagagcaatta
gaggccatgactggtggggagcagctaaaagctgagggtggttattttggccagatcaga
aacactaaaaaatcttctcagagattaaaggatgcactactagatcatgatcttgctctt
cctctctgtttacttatggctcagcagaggaatggggtaatttttcaagagggtggagaa
aaacacttgaaacttgtgggaaagctgtatgaccagtgtcatgataccctagtacagttt
ggtgggtttttagcatccaatctaagtacagaagattatataaagcgagtgccttcaatt
gacgtgctctgtaatgaatttcatacacctcacgatgcagcattttttctgtctaggcca
atgtatgcacaccatatttcgtcaaaatacgatgaacttaaaaaatcagaaaagggaagt
aaacagcaacataaagtccataaatacattacatcatgtgagatggtgatggctcctgtc
catgaagcagtggtctccttacacgtttccaaagtctgggatgatatcagccctcagttc
tacgctacattttggtcattgacaatgtatgaccttgcagttccacataccagctatgaa
agagaagtcaataaacttaaagtccagatgaaagcgattgatgacaatcaggaaatgcct
ccaaataagaagaaaaaagagaaggaacgctgcacagcccttcaggacaagcttcttgaa
gaagaaaagaagcagatggaacatgttcagagagttcttcagagactaaaattggaaaaa
gacaactggcttttagcaaagtcaaccaaaaatgagaccatcacaaaatttctacagctg
tgtatatttcctcgctgcattttctcagcaatagatgctgtgtactgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctttgctacgaccgagta
ttttctgacataatttacacagttgcaagctgtactgaaaatgaagctagtcggtatggg
agatttctctgctgcatgttagagacggtgaccaggtggcatagtgatagagccacatat
gaaaaggaatgtggaaactatccaggattccttactatattacgggcaactggatttgat
ggtggaaataaagctgatcaattagattatgaaaattttcgacatgttgtacataaatgg
cattacaaacttaccaaggcatcggtacattgccttgagacaggcgaatatactcacatc
aggaatatattgattgtgctaacaaaaatacttccttggtacccaaaagttttgaatctg
ggtcaggccttggaaagaagagtgaataaaatatgccaagaagaaaaagaaaagaggcca
gatctatatgcattggctatgggctactgggggctgttgaaatgtagaaagtcacacatg
atacctgaaaatgaatttcatcacaaagatcctcctccaaggaatgctgttgccagtgta
caaaatgggcctggtggtgggacttcgtcatcatccctaggaagtgcatctaaatcggat
gaaagtggtactgaggagactgataaaccaagggagagatctcagtgtggtacaaaagct
gttaataaggcttctagtaccacaccaaaagggaattcaagcaatggaaatagtggctct
aacagcaacaaagctgttaaggaaaatgacaaagaaaaagtgaaagagaaagataaagag
aaaaaagaaaagactccatctacaactccagaggccagggtacttggtaaagatagtaaa
gaaaaaccaaaggaagagcggccaaataaagatgaaaaagcaagagagacaaaggaaaga
acgcctaagtctgacaaagagaaagaaaaattcaagaaggaagaaaaagctaaagatgag
aaattcaagaccaccatccccagtgtagaatcaaaatcgactcaagaaagagaaagagaa
aaggagccatccagagaaagagatgtagcaaaggaaatgaagtcaaaggaaaatgttaaa
ggaggagaaaaaacaccagtttcagggtccttgaagtcacctgttcccagatcagatatc
tcggaatctgaaagggaacaaaaacgtcgcaaaattgatactcatccttctccatcacat
tcctccacagtaaaggttacagacatacttcccaaagttcctctgggttctgagaactat
gccagctcacctgtcatctccattcattttctacaggacagtctcatcgatctcaaggaa
tcttcatcaaagctctacattaatcatactcctccaccactgtccaagagtaaggagaga
gaaatggacaagaaagatttggacaagtcaagggaaagatccagagaaagagagaaaaaa
gatgaaaaggacaggaaagagcggaaaagggaccactcaaacaatgaccgtgaagtgcca
ccggacataacaaagaggcggaaagaggagaatggaacaatgggggtttcaaaacacaaa
agtgagagtccatgtgagtctcaatatccaaatgagaaagacaaagagaaaaataaatca
aaatcttcaggcaaagaaaaaggcagtagtgattcgtttaaatctgagaagatggataaa
atctcctctggtggcaaaaaggaatccaggcatgataaagaaaagatagaaaagaaagag
aaacgggatagttcaggaggaaaggaagagaagaaacatcataagtcctctgacaagcac
agataa
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