Peromyscus maniculatus bairdii (prairie deer mouse): 102920800
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Entry
102920800 CDS
T11302
Symbol
Ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmav03041
]
102920800 (Ddx1)
03016 Transfer RNA biogenesis [BR:
pmav03016
]
102920800 (Ddx1)
Enzymes [BR:
pmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102920800 (Ddx1)
Spliceosome [BR:
pmav03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102920800 (Ddx1)
Transfer RNA biogenesis [BR:
pmav03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
102920800 (Ddx1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
102920800
NCBI-ProteinID:
XP_006976650
Ensembl:
ENSPEMG00000016389
UniProt:
A0A6I9L4V3
LinkDB
All DBs
Position
22:complement(27711910..27740796)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSREVKEWH
GCRATKGLLKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
NYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGLAFEIPAHIKNQALFPACVLKNAELKF
NFGEEEFKFPPKDGFVALSKAPDNYVVKSQQTGSAQVSQTKFLPNAPKALIVEPSRELAE
QTLNNVKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLI
LSQVRFLVLDEADGLLSQGYSDFINRMHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDKLWERLGKNHIRTDDVHAKDNTRPGAN
SAEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFVQQGGGPDKKGHQF
SCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVATEKEKVWYHVCSNRGKGCYNTRLKEDGGCTIWYNEMQLLS
EIEEHLNCTISQVEPDIKVPVDEFDGKVTYGQKRAAGGGNYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccttctccgagatgggtgtcatgcctgagattgcacaagcggtggaagagatg
gattggcttctaccaactgatatccaggcagaatctatcccattgatcctaggaggaggt
gatgttcttatggcagcagaaacaggaagtggaaaaactggtgcgtttagtattccagtt
atccagatcgtgtatgagaccctgaaggaccaacaggaaggaaagaaggggaaaacaacc
attaaaactggtgcttcggtgctcaacaagtggcagatgaacccatatgacagagggtct
gcttttgcaattgggtcggacggcctgtgttgtcagagcagagaagtgaaggaatggcat
gggtgcagagcgaccaaaggcttgctgaaagggaaacactactatgaggtatcctgtcat
gaccaggggctgtgcagagttggctggtctaccatgcaggcctccttagacctcggtact
gacaagtttggatttggcttcggtggaacaggaaagaaatcccataataaacagtttgat
aattacggagaggaattcaccatgcacgataccattggatgctacttagatattgataag
gggcatgtgaagttctccaagaatggaaaagatcttggtctggcatttgaaataccagca
catataaaaaaccaagcgctcttccctgcctgtgttctgaagaatgctgaattgaaattt
aactttggtgaagaagaatttaagtttccaccaaaagatggttttgttgctctttccaag
gccccagataactacgtcgtcaagtcacagcaaacaggtagtgcacaggtgtcccaaaca
aaatttctccctaatgctcccaaagctctcattgtggaaccctctcgggagttagctgag
caaaccttgaacaacgtgaagcagtttaagaagtatattgataaccctaagttacgggag
cttctcataattggaggtgttgcagctcgggatcagctctctgttttggagaatggggtt
gatattgtcgtcggtactccaggaagactagatgatttggtatcaactggaaagctcatc
ttgtctcaagtcagattcttggttctggatgaagcagatgggcttctatcccaaggttat
tctgactttattaataggatgcacagtcagattcctcagattacttctgatggaaaaaga
cttcaggtgattgtttgctctgccactctgcattctttcgatgtaaagaagctgtctgag
aagataatgcattttcccacttgggtcgatttgaaaggggaagactctgttccagatact
gtgcaccatgtcgtcgtccctgtcaatccaaaaactgataagctctgggaaaggctgggg
aagaatcacattcgaactgatgatgtacacgcaaaagataacacgagacctggtgctaac
agtgcagagatgtggtctgaagctattaaaatccttaagggggagtatgctgtccgagca
atcaaggagcacaagatggatcaagcgattatcttctgtagaactaaaattgactgcgat
aacttggagcagtactttgtgcaacaaggaggaggacctgataaaaaaggacaccagttc
tcatgtgtgtgtcttcacggcgacagaaagcctcatgagagaaagcaaaacttggaaaga
tttaagaaaggagacgtaagattcttgatttgcacagatgtagctgcgagaggaattgac
atccacggtgttccttatgttataaatgtcaccctgcctgatgagaagcagaactatgtg
caccggattggcagagtgggacgagctgaaaggatgggcctggccatttccctggtggca
acagaaaaagaaaaggtttggtaccatgtatgcagcaaccgtgggaaaggatgctataac
acgaggctcaaggaagatggtggctgtaccatctggtacaatgaaatgcagctcctttcc
gaaatagaagaacacctgaactgcaccatttcccaggtggagccagacatcaaggttccg
gtggatgagtttgatgggaaagttacgtatggtcagaagagggctgctggcggtggaaac
tataaaggccatgtggatatcttggcacctaccgttcaggagttggccgcccttgagaag
gaagcacagacatctttcctgcaccttggctaccttcccaaccagctgttccgaaccttc
tga
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