Peromyscus maniculatus bairdii (prairie deer mouse): 102921459
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Entry
102921459 CDS
T11302
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102921459 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102921459 (Mtrex)
03041 Spliceosome [BR:
pmav03041
]
102921459 (Mtrex)
03009 Ribosome biogenesis [BR:
pmav03009
]
102921459 (Mtrex)
03016 Transfer RNA biogenesis [BR:
pmav03016
]
102921459 (Mtrex)
Enzymes [BR:
pmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102921459 (Mtrex)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
102921459 (Mtrex)
Spliceosome [BR:
pmav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102921459 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
102921459 (Mtrex)
Ribosome biogenesis [BR:
pmav03009
]
Eukaryotic type
Pre-60S particles
Helicases
102921459 (Mtrex)
Transfer RNA biogenesis [BR:
pmav03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
102921459 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102921459
NCBI-ProteinID:
XP_076408003
LinkDB
All DBs
Position
15:42748309..42819231
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSATAAGAKKDKDKEKEKWKGPPAPTDKAGKRLDAKLQSESASGG
KNKRDADVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
EYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggacgagctcttcagcgtcttcgaggatgactcggccaccgca
gcgggagccaagaaggacaaagacaaggagaaagagaagtggaaggggccgccagcgccc
acagacaaggcggggaaacgactagatgctaaattacaatcagaatcagccagtggtggg
aaaaacaagagagatgcagatgttgaaggcacagatgaaccgatttttggcaagaagccc
aggatagaagactcgattaatgaagacttaagtttggcagacctgatgcccagagtcaag
gttcaatcagttgaaacagttgaaggctgtacgcatgaggtagctcttcctgcagatgag
gagtatataccacttaaacctcgagttggaaaggcagcaaaggaatacccattcattctt
gatgctttccaaagagaagccattcagtgtgttgataataatcagtctgtgttagtatct
gctcatacgtcagcgggaaaaactgtgtgtgctgagtatgctattgcattggctttaaga
gaaaaacagcgtgtaatatttaccagcccaatcaaggctctcagtaaccagaaataccgt
gaaatgtatgaagagtttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgactacagagattttgagaagtatgctgtatagaggttct
gaagtaatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtgtgggaagaaactattattttgctgccagataatgtccattatgtc
tttctttcggctactattccaaatgctcgacagtttgctgaatggatttgccacttacat
aaacagccctgccatgtaatttatacggattatcgacctactccattgcaacactacata
tttccagcagggggagatggccttcaccttgtggtcgatgaaaatggtgacttcagagaa
gataattttaataccgcgatgcaagtccttcgagatgcaggtgatttggccaaaggagac
cagaagggacggaaaggaggaacgaaaggtccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattatcttcagttttagtaagaaagattgtgaa
gcatatgctcttcaaatgactaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcaataatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgaacacgtacttcctcttttgaaacgggggattggtattcatcatggtggtttactt
cctattttgaaggaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgtaaatttgatgggaaggattttagatggatttcctctggtgagtacattcagatg
tctggccgtgctggaaggaggggaatggatgaccgaggaattgtaattcttatggtagat
gaaaagatgagcccaacagttggaaaacaactacttaagggctcagctgaccctctgaat
agtgctttccatctgacctataacatggttttgaacttactacgagtagaagagattaac
cccgagtacatgctggaaaagtccttctatcagttccagcattacagagcaatcccagga
gtggtggagaaggtaaagaattcagaagagcagtataataaaatagtaatccccaatgaa
gaaaatgtggtcatctattacaagattaggcagcaacttgccaagctgggaaaagagatt
gaagaatatattcataaaccaaaatactgcttaccatttctacagccaggtcgcttggta
aaggtgaaaaatgaaggagatgattttggttggggagtagtggtgaatttctccaaaaag
tcaaatgttaagcctaattctggcgagctggaccctttgtatgtggtggaagtgctcctg
cgctgtagcaaagaaagcctgaaaaattctgctactgaggcagcaaagccagcaaaacct
gacgagaaaggagagatgcaggttgttccagttctggtgcatctcttgtctgccatcagc
accgtcaggctctacatccccaaagaccttcggcctgtggacaacagacagagtgttctc
aagtccatacaggaagttcagaagcgttttcctgatggcgttcctttgttagatcctatt
gatgatatgggcattcaggaccaaggactgaaaaaagtcattcagaaagtagaagctttt
gagcatcggatgtattcacacccacttcacaatgatccaaatttggaaaccgtgtataca
ctttgtgaaaaaaaagcacagattgcaatcgatattaaatccgcaaagcgagaactgaag
aaggcaagaactgtcctgcagatggatgaactcaaatgtcgcaagcgtgttttaagaagg
ttgggctttgccacgtcctctgatgtcatcgagatgaaaggacgggtggcttgtgaaata
agcagtgccgatgagctccttctaacagagatgatgtttaatgggctcttcaatgacctt
tctgcagaacaggcaactgcactactaagctgttttgtgtttcaagagaattctagtgag
atgcccaaattaacagaacagttagctggaccccttcgacaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagcgaaactggagattgacgaagaaacttacctaagc
tcgttcaaacctcacctgatggatgtggtgtacacctgggccactggagccacatttgct
cacatctgcaagatgacagatgtctttgaaggcagcataattcgctgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacacagagctggag
aacaaatttgctgaaggaatcaccaaaatcaagagggatattgtattcgctgccagcctc
tacttatag
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