Peromyscus maniculatus bairdii (prairie deer mouse): 102922528
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Entry
102922528 CDS
T11302
Symbol
Ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X2
KO
K10610
DNA damage-binding protein 1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03420
Nucleotide excision repair
pmav04120
Ubiquitin mediated proteolysis
pmav05161
Hepatitis B
pmav05170
Human immunodeficiency virus 1 infection
pmav05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102922528 (Ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
102922528 (Ddb1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
102922528 (Ddb1)
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
102922528 (Ddb1)
05161 Hepatitis B
102922528 (Ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmav04121
]
102922528 (Ddb1)
03400 DNA repair and recombination proteins [BR:
pmav03400
]
102922528 (Ddb1)
Ubiquitin system [BR:
pmav04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
102922528 (Ddb1)
DNA repair and recombination proteins [BR:
pmav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
102922528 (Ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
102922528 (Ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
102922528
NCBI-ProteinID:
XP_006993906
Ensembl:
ENSPEMG00000012241
UniProt:
A0A6I9MGV1
LinkDB
All DBs
Position
1:162807743..162834538
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtcgtaacggcgcagaagccgaccgcagtgaacggctgcgtgacc
ggacactttacttctgcggaagatctgaacctgttgattgctaaaaacacaagattagag
atctatgtggtcactgcagagggtcttcggccggtcaaagaggttggcatgtatggaaag
attgcagtcatggagcttttcaggcccaagggggagagcaaagacctgctattcatcttg
actgctaagtacaatgcctgcatcctggagtataagcagagtggcgaaagcattgatatc
attacgagagcccacggcaatgtccaggaccgtattggtcgcccctcagagactggcatt
attggtatcattgatcctgagtgccggatgattggccttcgactctacgatggcctcttc
aaggtcattccactagacagagacaataaagagctcaaagcctttaacatccgtctagag
gaattgcatgtcattgatgtcaagttcctgtatggttgtcaagcacctaccatttgcttt
gtttaccaggaccctcaggggcggcatgtgaaaacctatgaggtgtctcttcgagagaag
gagttcaacaagggcccttggaaacaggagaatgtagaagctgaagcttcaatggtgatc
gcagtccccgagccttttggaggtgccatcatcattggacaggaatcaatcacctatcat
aatggtgataaatacctggcaattgctcctcctatcatcaagcaaagcactattgtgtgc
cacaaccgggtggatcctaatggctcacgataccttctgggagatatggaaggacggctc
ttcatgctgcttttagaaaaggaggagcagatggatggcactgtcaccctcaaggatctc
cgtgtggaactccttggagagacctctattgcagagtgcctaacatacctcgataatggt
gttgtatttgttggatctcgcctgggtgactcccagcttgtaaagctcaatgttgacagc
aatgaacaaggctcttacgtagtagccatggaaacctttaccaatttaggccccatcgtg
gatatgtgtgttgtggacctggagaggcagggacagggtcagctggtcacttgctctgga
gctttcaaggaaggttccttgcggatcatccggaacggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggccactgcggtctgaccccagtcgggag
actgatgacactttggtactctcttttgtgggccagacaagagttctcatgctaaatgga
gaggaagtggaagaaacagaactgatgggctttgtggatgatcagcagactttcttttgt
ggcaacgtggctcatcagcaacttatccagatcacttcagcatctgtgaggttggtctct
caagagcctaaagctttggtcagtgagtggaaagagcctcagggcaagaacatcagcgtg
gcctcatgcaacagcagccaggtggttgttgctgtgggaagggcactatactaccttcag
atccatccacaggaactccggcaaatcagccacacagagatggaacatgaagtggcttgc
ttggatattaccccattaggggacagcaatgggctgtccccactttgtgccattggcctc
tggacagacatctcagcacgtatcttgaagctcccatcctttgaactactgcacaaggag
atgctaggtggagagatcatccctcgatctattctgatgaccacctttgagagtagccac
tacctcctctgtgccttgggagatggggctcttttctactttgggctcaacatcgagaca
ggcctgctgagtgaccgtaaaaaggtgactttgggcacccagcccacagtgttgaggaca
ttccgttctctttctaccaccaacgtctttgcttgctctgaccggcccactgtcatctat
agcagcaaccacaagttggtcttctccaatgtcaacctcaaggaggtgaactatatgtgt
cccctcaactcagatggctatcctgacagtctggcattggccaataacagcacccttacc
attggcaccatcgacgagatccagaaactccacattcgcacagttcctctctacgaatct
cccaggaagatttgctatcaggaagtgtctcagtgctttggggtcctttcgagccgcatt
gaagtccaagacactagtggaggcacaactgctctgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaagcttttctctagcagtactgctcctcacgagacc
tcgttcggagaagaggtggaggtgcacaacctcctcatcattgaccagcacacttttgaa
gtgcttcatgcccatcagtttctacaaaacgagtatgccctcagcctggtctcctgcaaa
ttgggcaaagaccccaacacatactttattgtgggaacagccatggtatatcctgaagag
gcggagcctaagcagggtcgtattgtggtcttccagtattcagatggaaaactgcagacc
gtggctgaaaaggaagtgaaaggggctgtgtattctatggtggagtttaatgggaagctg
cttgccagcatcaatagcacggtgcggctctatgagtggaccacagagaaggagctccgc
actgagtgtaatcactacaataacatcatggccctctacctgaagaccaagggtgacttc
atcctggtgggcgacctcatgcgttcagtgctgctgctggcctacaagcccatggaagga
aactttgaagagattgcccgagactttaatcccaactggatgagtgcagtggaaatcttg
gatgatgacaatttcctgggagctgaaaatgcctttaacttgtttgtgtgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctgcaggaggttggtctcttccacctg
ggcgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggcgagact
tccacccctacacagggctccgtgctctttggcacagtcaacggcatgatagggctggtg
acctcactgtcagagagctggtataacctcctgttggacatgcaaaaccgactcaacaag
gtcatcaaaagtgtgggcaagatcgaacactccttctggagatcttttcacactgagcgg
aagacagaaccagccacaggcttcatcgatggtgacctgattgaaagtttcctagatatc
agccgccccaagatgcaggaggttgtggcaaaccttcagtatgatgatggcagtggtatg
aagcgggaggcgactgcagacgacctcatcaaagttgtggaggagctaactcggatccat
tag
DBGET
integrated database retrieval system
