Peromyscus maniculatus bairdii (prairie deer mouse): 102922788
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Entry
102922788 CDS
T11302
Symbol
Shprh
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pmav04121
]
102922788 (Shprh)
Enzymes [BR:
pmav01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102922788 (Shprh)
Ubiquitin system [BR:
pmav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
102922788 (Shprh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
PHD
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4
zf-RING_2
PEP-utilisers_N
TPR_12
LMBR1
TPR_10
Motif
Other DBs
NCBI-GeneID:
102922788
NCBI-ProteinID:
XP_076408878
LinkDB
All DBs
Position
16:complement(47828192..47900214)
Genome browser
AA seq
1677 aa
AA seq
DB search
MSSRRKRAPPVKVDEERQQQLHWNMHEELRNEPLPLTVEEQSCSGADSSSDCILIDDDPP
EDVVHRDKKRRSEAVGTSESTEKETPLSVKLNVTISPYHDDQSWKALLGDFALQLLHEES
SVEHFSERSFTLMSSESSNQFLIYVHSECKDEEKQESVLKESADSYGKGLRVESSFSSDM
LQDLAWLQKKRGIKLYQRPEGNHTIKVGIYILEAGLARLDFMSDASSRMKKFNQLMKRVM
EKLHNFIIPDVPEEDEDDSDSEPEGQDIDELYHFVKQTHQQETQSVQVDVQHPALIPVLR
PYQREAVNWMLQQEHFRSVPAGDNSLHFLWREIVTPDGLKLYYNPYTGCIIRDFPHAGPQ
LLGGILADEMGLGKTVEVLALILTHTRQDIRQDGLTLPEGKVVNYFIPSHCPKGKLKNRE
IQDTEYEPKEKVHCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYKYDVQRNRSLLKR
MLKCLILEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQVVGSPRKIQKELRKSVNKD
TDSEYLPSNTSDDDDDPYYYYYKARKSHSKLKKKPVFLPKKEKRQPISPDPQIHSPAAGD
AASADADVSGRAPASEDKRDPEAQDRAGSPKPADEELAHSNTVSPFESSDYRFECICGEF
DQIGRKPRVQCLKCHLWQHAKCVNYEEKNLKVKPFYCPHCLVAMEPVSTRATLIISPSSI
CHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELNYVDIPH
SNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCI
SGTPVQRGLEDLFGLVVFLGIEPYCVKHWWIRLLYRPYCKKNPQHLYSFIAKILWRSAKK
DVIDQIQIPPQTEETHWLHFSPVERHFYHRQHEVCCQDAVVKLRKISDWALRLSSLDRRT
VTSILYPLLRLRQACCHPQAVRGEFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCA
LNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHATHNLMELLAAKHPGI
PPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALQPVQQSIRELQRKIHSNSPWWLNVI
HRAMEFSVDEELVQRVRNEISSNYKQQTDKLSMSEKFRDCRGLQFLLTTQMEELTKVQKL
VREAVKKLERPPSRDVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFSNTVKGQT
AIFEEMIEDEEGLVDDRVPTTTRGLWAISETERSMKAILSFARSHRFDVEYVDEGSVSMD
LFEAWKKEYKLLHEYWMTLRNRVSAVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVE
QNRIKLVNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVL
TCGHCFCNECTSIIIEQYSVGSHRSSIKCAICRQTTSHKDVSYVFTSEKANQEDDIPVKG
SHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFTQISRIKTFQE
NLSAFKHDPQVNILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKP
TIVHRFLIKATIEERMQAMLKTAERSHTSSPGKHSEASVLTVADLADLFTKETEELE
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgaaggaaacgtgctcccccagtgaaggtggatgaggaaaggcagcagcag
cttcactggaacatgcatgaagagctgaggaatgaaccgctccccttgactgttgaggag
cagtcctgctcgggtgcagactcctcttctgattgcatcctcatagatgatgaccctcct
gaagatgtggttcacagagataagaagaggcggtcagaggctgtgggcacctcagaatcc
actgaaaaagagacccctttgtctgtcaagttgaatgttaccatttctccctatcatgac
gatcagtcttggaaagcattgctgggagattttgctcttcagcttctccatgaagagagt
tcagttgaacatttttctgaaaggagttttacattgatgagttcagagtcaagcaatcag
ttcctgatctatgtccattcagaatgtaaagatgaggaaaaacaagaaagtgtgcttaaa
gaatcggctgatagttatggcaagggtcttcgagtggaatcgtccttcagtagtgacatg
ttacaggatttggcctggctgcagaagaaaagaggaataaaactttatcagcgacctgaa
gggaatcatacgatcaaggttggaatttatatcttggaagccggcctagcaagactagac
tttatgagtgatgcaagttcaagaatgaaaaagttcaatcagctcatgaagagagtaatg
gaaaagttacataattttattattccagatgtgccagaagaagatgaggatgattcagat
agtgagccagagggccaggacattgatgagctctatcactttgtgaagcaaacacaccag
caagaaacacagtcagttcaagtggatgtccaacatcctgcactgatcccagtactgaga
ccgtaccagagagaggccgtcaactggatgctacaacaagagcatttcagaagcgttcct
gctggtgacaactccctgcacttcttgtggcgagaaattgttacacctgatggtttgaaa
ctctactataatccatatacaggctgcatcattcgtgatttcccacatgctggaccacag
ttgcttggtggaatcttagcagatgagatgggtctcggaaagacagtggaagttctggct
ctgattctgacacatactcgacaagacatcagacaagatggtctcactcttcctgagggg
aaagtggtgaattatttcatcccatctcactgtcccaaaggaaaattaaaaaatagagaa
atccaggatacagaatatgaaccaaaagaaaaagtgcactgcccccctacacgtgtgatg
atcctaacagctgtgaaagaaatgaatgggaaaaaaggagtttctattctttctatctat
aagtatgtcagctccatatacaaatacgatgttcagcggaaccggagtcttttgaagcgg
atgctaaaatgtttaatcttggaaggtcttgtgaaacagatcaaaggccatggtttctct
gggacttttacactggggaagaattacaaggaagaagatatatgtgataaaacaaagaag
caggtggtggggagtccaaggaaaattcagaaggagttaaggaaatcagtgaacaaggac
acagactctgaatacctgccatcaaacacttctgatgatgatgatgatccttattattat
tactataaggccagaaaaagccatagtaaattgaagaaaaaacctgtgttcctccctaag
aaggaaaagagacagcctatcagtccagatccccaaattcactctccagctgctggtgac
gctgcaagtgctgatgctgatgtgtcgggaagggcacctgcctctgaggacaagagagac
ccagaagcacaagaccgtgctggctctccaaagcccgctgatgaggagttggcacattct
aacactgtgagtccctttgagtcctctgattaccgctttgagtgcatatgtggtgaattt
gaccagattggccgaaagccgagagttcagtgtctgaagtgtcacctgtggcagcatgca
aagtgtgtgaattacgaggagaagaatctgaaggtgaagcctttttactgcccccactgc
cttgttgcaatggagccagtgtcaacaagagcaacgctgatcatctctccaagttccatt
tgccatcagtgggtggatgaaatcaaccggcatgtgagatcatcatctcttcgagttttg
gtatatcaaggagtgaagaaagatggctttttacagcctcattttttggcagaacaagat
atagttatcattacctatgatgtccttcgttcagaactaaactatgttgatatcccacat
agcaatagtgaggatgggcgtcgcctgaggaaccagaaacgctatatggctattcccagc
cccctggtagcggtggagtggtggagaatctgtcttgatgaagcccagatggttgaatgt
cctacagtaaaagctgcagaaatggcccagcgtttgagcgggattaatcggtggtgtatc
agtggcactccagtacagagaggattggaggatctttttgggctggtggtctttcttggg
attgaaccttactgtgtcaaacactggtggattcgacttctctatcgcccatactgcaag
aagaatcctcagcatctctacagttttattgccaagatactgtggaggtctgcaaagaaa
gatgtcattgaccaaatccagattccacctcagactgaggaaacgcactggctccacttt
tcccctgtggagaggcatttctatcaccgtcagcatgaggtgtgctgccaggatgccgtg
gtgaagctcaggaagatctccgactgggccctgagactgagcagcttggacagaaggact
gtcacctccatcctgtaccctctgctgcggctcagacaggcctgctgccatccacaggct
gttcgcggggagttcttgccactccagaagagcaccatgacaatggaagaattgctcacg
tctttgcagaagaaatgtggaactgaatgtgaagaggcccatcggcaactagtttgtgcc
ctcaacggcttagcaggcatccatatcattaaaggtgagtatgccttggcagcagagcta
tacagagaagtactgcgctcctctgaggagcacaaaggaaaactcaaaacggattcactt
caaagacttcatgccacacataacttaatggagctgttggcagccaaacacccagggatc
cctcccaccttaagagatggcagacttgaagaagaggccaagcagcttcgagagcactat
atgagcaagtgtaacacagaagtggctgaagcccagcaagccttgcagcctgtgcagcag
tccatacgggagctccaaaggaagattcattctaattctccttggtggctgaatgtaatc
cacagagcaatggagttttctgttgatgaggaacttgttcagcgggtgcgaaatgaaata
agcagtaactacaagcaacaaactgacaagctttctatgtcagagaagttccgtgactgc
agaggtcttcagttcttacttacaacacaaatggaagagctcactaaggtccagaagtta
gtgagagaggctgtgaagaagctggagagacctccatcccgtgatgtgattgagtctgca
acagtctgccacctgcgaccagctagactccctctgaactgctgcgtcttttgtaaagct
gatgaattgttcacagagtatgaatcaaagctattttctaacacagtcaaaggccagact
gcaatctttgaagaaatgatagaagatgaagaaggacttgtggatgatcgagtacctact
actacccggggcctgtgggcaataagtgagacagagcggtctatgaaagcaatattgtca
tttgcaagatcacataggttcgatgttgaatatgtagatgaagggagtgtttcaatggat
ctcttcgaggcatggaagaaggagtataagttactccatgaatactggatgacgctgaga
aatcgtgtgtcagctgttgacgaacttgcaatggctacagagcgactaagagtgcgccat
cccaaggaaccaaagccaaacccacctgtccatcacatcattgaaccacatgaggttgaa
cagaaccgtataaaactggtcaatgataaagctgttgctacatcacaacttcagaaaaaa
cttggacagcttctttacttgacaaatttggagaagtctcaagacaaaacatcaggcggt
gttaacccagagccttgtcccatctgtgctcgacagctgggaaaacagtgggcagtgctg
acctgtggacactgcttctgtaatgaatgcacgtctattataattgaacagtacagtgtg
gggtctcatcgaagctccatcaagtgtgctatctgccgccagaccacatcacacaaagat
gtctcctatgtctttacctcagagaaagcaaaccaagaagatgacatccctgtaaagggt
agccattctacaaaagtggaagctgtggtcagaactctgatgaaaatacagcttagagat
ccaggggccaaagcactcgtcttctcaacgtggcaagatgtattagatattatttcaaaa
gctctcaccgacaacaacatggaatttacacaaatcagtcgcattaagacattccaggag
aacctttcagcttttaaacatgatcctcaagtcaatattttgctgctgcccctgcacaca
ggctctaatggactaactatcatcgaagccactcatgtcctcttggtggagcctatactg
aaccctgcccatgagcttcaggccattgggagggtgcaccggatcggacagacaaaacct
actattgtacatagattcttaattaaagcaacaatagaagagcgaatgcaggcaatgctg
aaaactgctgagaggagtcatacaagctcacccgggaagcactctgaagcctctgttttg
actgtggctgacttagcagacctgtttaccaaagaaactgaagagcttgaatga
DBGET
integrated database retrieval system
