Peromyscus maniculatus bairdii (prairie deer mouse): 102922805
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Entry
102922805 CDS
T11302
Symbol
Col6a3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X4
KO
K06238
collagen type VI alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
pmav05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102922805 (Col6a3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102922805 (Col6a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102922805 (Col6a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102922805 (Col6a3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102922805 (Col6a3)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102922805 (Col6a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmav04147
]
102922805 (Col6a3)
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102922805 (Col6a3)
Exosome [BR:
pmav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102922805 (Col6a3)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102922805 (Col6a3)
Hyaluronan
Extracellular matrix or blood plasma proteins
102922805 (Col6a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102922805
NCBI-ProteinID:
XP_015862596
Ensembl:
ENSPEMG00000023168
UniProt:
A0A6J0E2S2
LinkDB
All DBs
Position
13:complement(8787849..8872163)
Genome browser
AA seq
2866 aa
AA seq
DB search
MRKHRHLPLVAVFSLLLSGIVVTHAQQQAVMEVNKRDIVFLVDGSSSLGQSNFNAIRDFI
TKVIQRLEIGQDLVQVSVAQYADTVKPEFYLNSHSTRRDAITAVRKMKPLEGSVLYTGSA
LDFVRNNLFTSSVGHRAAEGVPKLLVLITGGKSLDEVSQPAQELKRGSIMAFAIGSRAAD
EDELKEIAFDSSLVFTPAEFRPSPLLSMLPNLLAPLRTLTGTTEVHVNKRDIIFLLDGSD
NVGKNNFPYVRDFVTNLVNSLDVGSDNIRVGLVQFSDTPVTEFSLDTYQTKSEMLAHLRR
LQLKGGAGLNTGSALSYVRANHFTEAGGSRTQERVPRLLLLLMAGPSEDAYLQAANALVR
EGVLTFCVGASRADKAELEHIAFNPSLVYLMDDFSSLPALPQQLIQPLTTYVSGGVQEVP
LTQPEGKRDILFLFDGSANVVGQFPAIRDFLYKIIEELDVKPDGTRVAIAQFSDDVRLES
RFSEHQSKAEILNLVKRMKIKTGKALNLGYALDYAQRDIFVRSAGSRIEDNVQQFLVLLV
AGRSTDAVAGPASSLKQRGVIPFIFQAKNANPDELEQIVPSPAFILTAESLPKIGDLQPQ
IVSLLKAAQSVEPVSGEKDVVFLIDGSEGVRSGFPLLKEFVQRVVESLDVGPDRVRVALV
QYSDRTRPEFYLNSHMDQQGVINAVRRLTLLGGPIPNTGAALDFVLRNILTSSTGSRIAE
GVPQLLIVLTAERSGDDVRGPSAVLKQGGAVPIGIGIGNADISEMQTISFIPDFAVAIPS
FRELGTVQQVVSERVIQLNREELSNLKPVILPLPSAGASSKKDVVFLIDGSQNASPEFQH
IRTLIERMVEYLDIGFDTTRVAVIQFSEDPKMEFPLNAHFSKDEVQNAVRRLRPKGGRQV
YIGNALEYVLKNIFQRPLGSRIEEGVPQFLVLISSSKSDDEVDASAVELKQFGVAPLTIA
RHTNQEELVKISLSPEYVFSVSTFRELPRLEQKLLTPITTLTSQQIQQILTSTRYPPAVI
ESDAADIVFLIDSSDAVKPEGIAYIRDFVSKIVQKFNIGPSQKRIGVVQFSNDVFPEFYL
KTHRSQAPVLEAIRRLRFKGGSPLNTGKALEFVARNLFVKSAGSRIEDGVPQHLVLFLGG
KSQDDVARHAQIISSSGITSIGIGDRNIDRVDLQTIINDPRLVFTVREFRELPNIEERVM
LAFGPSGATPRPPGVDIFSPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFVSEIVDTVY
EDGDSIRVGLVQYNSDPTDEFFLRDYSTKRQIIEAINKVVYKGGRHANTKVGLEHLRLNH
FVPDAGSRLNERVPQIAFVITGGKSVEDAQEVSLALTQKGVKVFTVGVRNIDSEEVGRIA
SNSATAFRVSSVQELSELSETVLETLHDAMHETLCPGVTDVSKACNLEVILGFDGSRDQN
VFVSQKGLESKVDTILNRISQMQRISCSGNQLPTVRVAVVANTPSGPVEGFDFAEYQPEL
FEKFRNMRSQHPYILTADTLKLYQNKFRQASPDSVKVVIHFTDGADGDLADLHRASEELR
QEGVRALILVGLERVANLERLTQQLEFGRGFMYDRPLRLNLLDLDYELAEQLDNIAEKAC
CGVPCKCSGERGDRGPIGSIGPKGISGEDGYRGYPGDEGGPGERGPPGVNGTQGFQGCPG
QRGVKGSRGFPGEKGELGEIGLDGLDGEEGDKGLPGSSGEQGSPGRRGDKGPKGEKGERG
DVGIRGDPGDSGRDSQQRGPKGETGDIGPMGLPGRDGVPGRPGDPGKDGGFGRRGPAGAK
GNRGGPGQPGFEGEQGTRGSQGPPGPVGPPGLIGEQGIPGPRGSGGTAGAPGDRGRTGPL
GRKGEPGEPGPKGGVGNRGPRGETGDDGRDGIGSEGRRGKKGERGFPGYPGPKGTPGEPG
ADGPPGPKGIRGRRGNSGPPGIVGQKGDPGYPGPAGHKGNRGDSVDQCALIQNIKDKCPC
CYGPLECPVFPTELAFALDTSEGVTQDTFSRMREVLLSIVGDLTIAESNCPRGARVAVVT
YNNEVTTEIRFADSKKKSALLDSIQNLQVALTSKQQSLETAMSFVARNTFKRVRSGFLMR
KVAVFFSNKPTRASPQLREAVLKLSDAGITPLFLTSQEDRQLINALQINNTAVGHALVLP
ARGDLKDFLKNVLTCHVCLDICNIDPSCGFGSWRPSFRDRRAAGSDVDIDLAFILDSSEA
TTLFQFNEMKKYISYVVRQLDLSPDPKASQHFARVAVVQQATYESVDNASVPPVKVEFSL
TDYGAKEKLLDFLSRRMTQLQGTMALGNAIEYTIENVFESAPNPRDLKIVVLMLTGDMQR
QQLEEAQRAILQAKCKGYFFVVLGIGRKVNVKEVYSFASEPNDVFFKLVDKSTELNEEPL
MRFGRLLPSFVSSENAFYLPPDIRKQCDWFQGDQPVKNGVKFGHKHVNSPHSVNSSHTPK
VVTTMKPATTTRPTAIVNLPPAKPAPARPAPAQLVPVKSAPAKPAAPAKTAAAKPVAPAK
LPPPQPAAPAKVTPPQPAAPAKVTPPQPAAPAKVTPPQQAAPAKVTPPQQADSAKAPPPK
PVAPAKPAPAQPMHTQPAPAQPAPAQPVLAKPAAVKPVSANKHVAAKPVATNTATVRPAV
AAKPAAAKPAAARPLATASRTVATKPETARPQTKAAATKPATTKPLAKVSREVQVSEVTE
NSARLYWERPEPSASYFYDLTVTSAHDQSLVLRQNLTVTDRVIGGLLPGQTYHVVVVCYL
QSQVRGIYQGSFSTKKTQAPPLQPARPASSSTINLMVNTEPLFLTKTDICKLTKDGGTCD
QFKLLWYYDLNERGCKRFWYGGCGGNENRFKSQEECEKMCSPDLSA
NT seq
8601 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacaccggcatctgccccttgtggccgtctttagcctcctcctctcaggcatt
gtcgtgactcacgcccaacagcaagcagtcatggaagtcaacaagagggacatagtcttc
ctggtggatggttcctccagcctggggcagtccaacttcaatgccatccgagacttcatt
accaaagtcatccagaggctggaaatcggacaagacctggttcaggtgtcagtggctcag
tatgcagatactgtcaagcccgagttctatttaaattcccactccaccagaagggacgcc
ataactgctgtacggaagatgaagcccctggaaggctcagtcctgtacacgggctcagct
ctggactttgttcgaaacaacctatttactagctcagttggccatagggcagctgagggg
gttcctaagctcctggtgctgatcacgggtggtaagtccctcgatgaggtcagccagcca
gcccaggagctgaagcggggcagcatcatggcctttgccatcggcagcagggccgccgat
gaggacgagctgaaagagatcgctttcgactcctccctggtcttcactcctgctgagttc
cgcccttctcctttgctaagcatgctacccaatctgctggcgcccctcaggactctcact
ggaaccacagaagttcacgtaaacaaacgggatatcatcttccttttggatggatccgac
aacgttggaaaaaacaattttccttatgtgcgtgactttgtaaccaacctagttaacagc
ctcgatgttggaagtgacaatatccgtgttggcttagtgcaatttagcgacaccccagtc
acggagttctctctagacacttaccagaccaagtcagagatgcttgctcacctgaggcgc
ttgcagctcaaggggggcgcgggcctgaacacaggctctgccttgagctatgtccgtgcc
aatcacttcacggaggcgggcggcagcaggacccaggaacgtgtgcctcggttgctgctc
ctgctcatggcggggccttctgaggacgcttatttgcaagctgccaatgccctggtgcgt
gagggcgtgctgaccttctgtgtgggggccagccgggcggataaggctgagctagaacac
attgcctttaatccaagcctggtgtatctcatggatgatttcagctcgctgccggctttg
cctcaacagctgattcagcccctaactacatatgttagtggaggtgtacaggaagttcca
ctaacccagccagagggcaagcgggacattcttttcctctttgatggctctgccaatgtc
gtgggccagttccctgctatccgagactttctctacaagatcattgaggaactggatgtg
aagccggacgggacccgagtagcgatagctcagttcagtgatgacgtcaggctggagtca
cgcttcagtgagcaccagagtaaggctgaaatcctgaatcttgtgaaaaggatgaagata
aagacgggtaaagccctcaacctgggctacgccctggactatgcacagagggacatcttc
gtgaggtcggctggcagccgcattgaggataacgtgcagcagttcctggtgctgctggtt
gccggtaggtcgacagatgctgtggccggcccagcaagctccctgaagcagagaggcgtg
atacctttcatctttcaagccaagaacgctaatccggatgagctggagcagatcgtgcca
tccccggcattcatcctgactgcagaatcgcttccgaagattggggacctccagccacag
attgtgagccttctgaaagctgcccagagtgtagagcctgtatcaggtgaaaaggatgtg
gtgttcctgatcgatggctcggaaggtgtccgcagtggcttccccctgctaaaggagttt
gtgcagagagtagtggagagcctggatgtgggtcctgaccgggtgcgggtagccctggta
cagtacagcgatcggaccagacctgaattctacctgaattcccacatggaccagcagggt
gtcatcaatgccgtccgcaggttgacactgctgggtggcccaatccccaacacaggggcg
gcgctggactttgtgttgaggaatatcctgaccagttccacagggagcaggatagcagaa
ggtgtcccccagctcctgatcgtgctcacagccgagcggtcaggggatgatgtgagaggc
ccctcggcggtcctgaagcagggtggggctgtgcccattggcatcggcattgggaatgct
gacatctctgagatgcagaccatctccttcatcccggacttcgctgtggccattcccagc
ttccgggagcttgggacggtccagcaggtggtctccgagagggtgatccagcttaaccgt
gaggagctgagcaatttgaaaccagtgattttgccattgccgagcgcaggtgctagcagc
aagaaggatgtggtctttctcatcgatggatcccaaaatgccagcccggagttccagcac
atccgcaccctgattgagaggatggttgagtacctggacataggctttgacaccacccgg
gtagcagtcatccagttcagtgaggaccccaagatggagtttcctctgaatgctcacttc
agcaaggacgaagtgcagaatgctgtgcgccggctgaggcccaagggcgggaggcaggtc
tacatcggcaatgccctggagtacgtgctcaagaacatcttccagaggccgctggggagc
cggatagaagagggtgtcccgcagttcctggtcctcatttcatcatcgaagtccgatgac
gaggtagacgcctcagcagtggagcttaagcagtttggcgtggcccctctgaccatagcc
aggcacacaaaccaggaggagctggtgaagatctccctgagccccgagtacgtgttctca
gtgagcaccttcagggagctgcccagactggagcagaaactactgacacccattaccact
ctaacctcccagcagatccagcagatcctgaccagtactcgctatcctcctgcagtgatt
gaaagtgatgccgccgacattgtcttcctgattgacagctccgatgccgtcaagcctgaa
ggcatcgcttatatccgagactttgtgagcaagattgttcaaaaattcaacattggcccc
agtcaaaagaggattggggtcgtgcagttcagcaatgatgtcttccctgagttctacctg
aagacccacaggtcacaggctcctgtgcttgaagctatacggcgtctgaggttcaaagga
gggtctcccctgaacactggcaaagccctggagtttgtggcaagaaacctctttgtgaag
tctgctgggagccggatagaagatggagtgcctcaacacctggtgttattcctgggtggg
aagtcccaggatgatgtggctaggcatgcccaaattataagctcatcagggatcacgagt
atagggataggtgaccgaaacattgatagagtcgacttgcaaaccatcatcaatgacccc
agactggtcttcacggttcgggaattcagagagctgcccaatatagaagagagggtcatg
cttgcatttggaccatctggggctactcctcggcctcctggtgtagacatattttctccc
tcaaggccagagaagaaaaaggccgacatcgtgttcctgttggatgggtccatcaatttc
aggagggacagtttccaggaagtactccgttttgtatctgaaattgtggacaccgtctat
gaagacggcgattccatcagagtggggctggtccagtacaactcagaccccacggatgaa
ttcttcctgcgggactattccaccaaaaggcagattattgaagccatcaacaaagtggtc
tacaagggcgggaggcatgccaacaccaaggtgggcctggagcacctgcggctgaatcac
ttcgtgccagacgctggcagccgcctgaatgagcgcgtccctcagatcgccttcgtgatc
acaggagggaagtcagtggaggatgctcaggaagtgagcctggccctcacccagaaaggg
gtcaaggtgtttactgtgggcgtgaggaacattgactctgaggaggtggggaggatagcc
tccaacagcgccacggccttccgggtgagcagcgtacaggagctgtcggaactcagtgag
accgtcctggagactctgcatgacgccatgcacgaaaccctctgccctggtgtgacggat
gtttccaaagcctgtaatctggaagtcatcctggggtttgatggatctcgagatcagaat
gtatttgtgagtcagaagggactcgagtccaaggtggacaccatcttgaatcgaatcagc
cagatgcaaaggatcagctgcagcggcaaccagctgcccactgtgcgggtggcggtggtg
gccaacacgccctccgggccggtggagggctttgactttgccgagtaccagcccgagctg
tttgagaagtttcgcaacatgcgcagccagcacccgtacatcctcacagctgacaccctg
aagctgtaccagaacaaattcaggcaggcctcacccgacagtgtgaaggtagtcattcac
ttcacggatggagccgatggcgacctggctgacttacacagagcatcagaggaactccgg
caagaaggtgtccgagccctgatcctggtgggccttgaacgcgtggccaacctggagcgg
ctgacgcagcagctggagtttgggcggggcttcatgtacgacaggcccctgaggctcaac
ttgcttgacttggattatgagctggcagagcagcttgacaacattgccgagaaagcttgc
tgcggggttccatgcaagtgctctggagagagaggagacagaggacccatcggcagcatc
gggccaaagggcatctccggggaagacggctaccgaggctatcctggtgacgaaggtgga
cccggtgagcgaggtccacctggtgtgaatggtacacaaggtttccagggctgcccaggc
cagagaggagtcaagggttctcgaggattcccaggagagaagggtgaactgggagaaatt
ggcttggatggtctggatggtgaagagggagacaaggggttaccgggttcatctggagaa
caggggagtcctggaagaaggggcgacaaaggacccaaaggagagaagggagagagagga
gacgttggcattcgcggtgacccgggtgactcaggacgggacagccagcagagaggaccc
aaaggagagacgggtgacatcggccccatgggtctcccaggcagagacggcgtcccagga
aggccaggagaccccgggaaggatgggggctttggccgaaggggacctgcaggagctaag
ggcaacaggggcggtcctggccagccaggcttcgagggagagcagggtaccagaggctca
cagggtccccctggtcccgttggtcccccaggcctgattggagaacaaggaatccctgga
cctcggggaagtggaggtacagctggggcgcctggagaccgtggcagaactggtcccctg
gggaggaagggtgagccaggagagccagggccgaagggaggcgtcgggaaccgtggaccc
cgtggggagacgggagacgatgggagagacgggattggcagcgaaggacggagaggcaaa
aaaggagaaagaggattccctggctatccaggaccaaagggaacccctggtgagccaggg
gcagatggaccaccaggacccaaaggtatcagaggccgaaggggaaattcaggacctcca
gggatagttggacagaagggagaccctggctacccagggccagctggtcacaagggcaac
cgaggcgactctgtggatcaatgcgccctcatccaaaacatcaaagacaaatgcccttgt
tgctatgggcccctggagtgccctgtattcccaacagaacttgcctttgccctggacacc
tctgagggggtcactcaggacaccttcagccggatgcgagaggtgctcctgagcattgtg
ggagatctgaccatcgccgagagcaactgtccgaggggtgcccgagtggctgtggtcacc
tataacaatgaagtgaccacggagatccgatttgctgactccaagaagaagtctgccctg
ttagacagtattcagaatctccaagtggccttgacgtcgaagcaacagagcctggagact
gcgatgtcgttcgtggccaggaacacgtttaaacgtgtgaggagtggattcctgatgaga
aaagtggccgttttcttcagcaataagcccacgagagcatccccccagctccgagaggct
gtgctcaagctttcggatgcggggatcacacccttgttccttaccagccaggaggaccga
cagctcatcaacgctttgcagatcaataacacagcagtgggacatgccctggttctgcct
gcaaggggggacctcaaagacttcctgaagaacgtcctcacctgccatgtttgcttggac
atttgcaatattgacccatcctgtggatttggcagctggcggccttccttcagggaccgg
agggcagcaggtagcgatgtggacatagacctggctttcatcttggatagctcggaggcc
actactctgttccagttcaatgagatgaagaagtacataagctatgtggtcaggcagctg
gacctgagtccagaccccaaagcctcccagcactttgccagagtggctgtcgtgcagcag
gcgacctacgagtctgtggacaatgccagtgtgccccccgtgaaggtggaattctcactg
acagactatggtgccaaggaaaagctgctggacttccttagcaggaggatgacccagctg
cagggaaccatggccctgggcaatgccattgagtacaccatagagaatgtctttgaaagt
gcaccaaacccacgggacctcaaaattgtggtgctgatgctgactggtgatatgcagagg
cagcagctggaggaggcccagagagccatcctgcaggctaagtgcaagggttacttcttc
gtggttctgggcattggcaggaaggtgaacgtcaaggaggtgtacagctttgccagtgag
cccaatgatgtcttcttcaaacttgtggacaaatcaacggagctcaatgaggagcccctg
atgcgctttggaaggctgctgccatcctttgtcagcagtgaaaatgcattttacctgcct
ccagatatcaggaaacagtgtgattggttccaaggggaccaaccagtgaagaatggtgtg
aaatttggtcataagcatgtaaacagtccacatagtgttaattcaagtcatacgcccaaa
gttgtgaccacaatgaagccagcgacaacaaccagaccaacagcaattgtaaatctgcca
cctgctaagccagccccagctaggccagcccctgctcagctagtccctgttaaatcagcg
cctgctaaaccagcagcccctgctaagacagcagctgctaaaccagtagctcctgctaaa
ctaccccctcctcagccagcagcccctgctaaggtaacccctcctcagccagcagcccct
gctaaggtaacccctcctcagccagcagcccctgcaaaggtaacccctcctcagcaagca
gcccctgctaaggtaacccctcctcagcaagcagactctgccaaggcacctcctcctaaa
ccagtagctccggctaagccagcccctgctcaaccaatgcatactcagccagccccagct
cagccagccccagctcagccagtccttgctaaaccagccgctgtgaagccggtctctgcc
aacaagcatgtggccgccaaacctgtggccacgaacacagccacagtcagacctgcggta
gcggcgaagccagcagcggcgaagcccgcggcagcgagaccccttgctactgcttcaagg
acagttgctacgaagccagagaccgccaggccacagaccaaagcagctgccaccaagcca
gccactactaagcccctggcaaaagtgtcccgagaagtccaggtctctgaagtcacggag
aacagtgccagactctactgggagcggcctgagccctctgcttcctatttttatgacctc
actgtaacctcagcccatgaccagtcgctggttctaagacaaaacctcactgtcactgac
cgtgtcatcggtggcctgctgcctggacagacctaccacgtggttgtggtctgctacctg
cagtctcaggtcagaggcatctaccaagggagtttcagtacaaagaaaactcaggctcca
cctcttcagccagcacgaccagcatctagttcaaccatcaatctaatggtgaacacggaa
ccattgtttctcactaaaacagacatttgtaagctgaccaaagacggtgggacttgtgat
cagtttaagttactgtggtactacgacctcaatgagagaggctgcaagagattctggtat
ggaggttgtgggggcaatgagaacagattcaagtcacaggaagaatgtgaaaagatgtgc
agtcctgatttatcagcctga
DBGET
integrated database retrieval system
