Peromyscus maniculatus bairdii (prairie deer mouse): 102923511
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Entry
102923511 CDS
T11302
Symbol
Col27a1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102923511 (Col27a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102923511 (Col27a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102923511 (Col27a1)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102923511 (Col27a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102923511
NCBI-ProteinID:
XP_042127206
Ensembl:
ENSPEMG00000024161
UniProt:
A0A6J0DDG8
LinkDB
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Position
2:85308065..85429956
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AA seq
1855 aa
AA seq
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MGTGSARGARGTAAAGHGGGFLFAWILVSFAWHLASTQGAPEDVDVLQRLGLSWTKAGGG
RSPAPPGVIPFPSGFIFTQRARLQAPTATILPTTLGRELALVLSLCSHRVNHAFLFAIRS
RKHRLQLGLQFLPGRTLVHLGPRQSVTFDLDVHDGRWHHLALELRGRTVTLVTACGQHRV
PVPLPSRRDSTLDPQGSFLLGKMNPRAVQFEGALCQFSIHPVAQVAHNYCAHLRERCRQV
DTYGPQEGALFPWNSGPAFALHPEPALLGLGNLTRAPATLGTRPLGRGPMVTMAPAMPTK
PLRIVSPDVPQHSSAQTPLAPAKQSARKTPSPSPSTSLAGSTRIFHPAAAQPLQITATSP
TTRPPTARPPTKPSASALSVTPVKSPHATQKTAAPSFTKPVLPTQKPVNRTSHLAPSRAS
SPTVRPVQKTLVTPRPLAPSPRPLHPTAGLSKKPTIPTVAEAKSKTTGRASKPVLARTSG
PKTLQQTVVSLSPVPYLGSTRASRTLATAPPPLGTGNPRMAPPTRDSAPAPAGRKKFTGL
EASKKTRRKSSPRKPMPPSPEKTARDTPPRDLTTQSSKLSSPALVLAPAHLLSSSPRPTS
NSFPFFHLPGPTPFPMLMGPPGSKGDCGLPGPPGLPGLPGSPGARGPRGPPGPYGNPGPP
GPPGAKGQKGDPGLSPGQAHDGAKGNMGLPGLSGNPGPLGRKGHKGHPGAAGHPGEQGQP
GPAGSPGAKGYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGEM
GRPGFPGDFGERGPPGLDGNPGEIGLPGPPGVPGLIGDMGALGPLGYPGPKGMKGLMGGV
GESGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKAGDKGSLGFPGPP
GPEGFPGDIGPPGDNGPEGLKGKPGARGLPGPPGQPGAEGDEGPTGPPGVPGLEGQPGRK
GFPGRPGLDGSKGEPGDPGRPGPVGEQGLIGFIGLIGEPGIVGEKGDRGVMGPPGAPGPK
GSMGHPGTPGGIGSPGEPGSRGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSKGLKGRS
GPRGRPGQPGQQGAAGERGHSGARGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEM
GPKGPPGAVGEPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDLGPVGPDGLKGDK
GDSGPDGERGEKGQEGLKGEDGPPGPPGVTGVRGPEGKPGKQGEKGQMGAKGAKGYQGHL
GEMGIPGEPGPPGTPGPKGSRGTLGPMGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPK
GEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGH
PGPRGRPGPKGSKGEEGPKGKPGKAGPSGRRGTQGLQGLPGPRGVVGRQGPEGLAGPDGT
PGRDGQPGYQGEQGADGAPGPMGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGK
RGTEGGTGLPGNQGEPGAKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGL
MGKEGIIGPPGMLGPSGLPGPKGDRGSRGDWGLQGPKGPPGPRGRPGPPGPPWHPVQFQQ
DDLGAAFQTWMDAHGAVRSEQGYSYPDQLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKEN
PARVCRDLMDCEQRMADGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAVS
RVQMNFLHLLSSEGTQHITIHCLNLTVWQEGPGRLSARQAVRFRAWNGQVFEAGGQFRPE
VSVDGCKVRDGRWHQTLFTFRTQDPQQLPIVSVDNLPPVSSGKQYRLEVGPACFL
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgggatcggcgcggggggcccgaggcacagcggcggcaggacacggggggggg
tttctcttcgcctggatcttggtctcatttgcctggcatctggcctccacccaaggagct
cctgaagatgtggatgtcctccagcggctgggcctcagctggacgaaggccgggggtggc
cggagccccgcacccccaggtgttattcctttcccatccggcttcatcttcacacagcgg
gccagattgcaggcccccacggccacaatccttcccaccaccctgggccgggagttggcg
ctggtgttaagcctctgttcgcaccgcgtgaaccatgccttcctctttgccatccgcagc
aggaagcacaggctgcagctgggcttgcagttccttcccggcaggacactcgtccacctg
gggccccggcaatctgtgaccttcgacctggatgtgcatgatgggcgctggcaccacctg
gccctagagctgcgtggccgcacggtcacactggtgaccgcctgtgggcagcacagggta
cctgtccctctgccttcccgtagggactccacgctcgacccccagggctcctttctcttg
gggaagatgaaccctcgtgctgtccagttcgaaggtgcactctgtcagttcagcatccat
cccgtggcgcaggtcgctcataattactgtgcccacctgagagagcggtgtcgacaggtg
gacacatatggtccccaggagggagccctcttcccctggaactcgggcccagcttttgct
ttgcatcctgaaccagccttgcttggcctggggaacctgaccagggccccagcaaccctg
gggaccaggcctctaggcaggggacccatggtgactatggcccctgccatgcccaccaag
cccctgaggattgtctccccagatgtcccccaacacagctctgcccagaccccattggca
cccgccaagcagtcagccaggaaaactccctccccatcaccttcaacctctttggctggc
tccaccaggatttttcatccagctgctgcccaaccactacagatcacagccactagtccc
accacacgtccgcccaccgcacgtcccccgaccaaaccttccgcttctgccctttcagtc
acccctgtgaaaagcccccatgcaacccagaaaacagccgccccttcattcacaaagcct
gttctacccacccagaagccggtgaaccgcacctcccacctagcaccttccagagcctct
agtcccaccgtcaggcctgtccagaagaccctcgtgacaccccgacctctagcacccagc
ccccggcccctgcaccccactgctggcttatcgaagaaacccactattcccacagtagca
gaggctaaatccaagacgaccggtcgggccagcaagccagtcttggctcgcaccagtggc
cctaaaactcttcagcaaactgttgtgtccctgtcccctgttccctacctgggctctacg
agagcctctcggacactggctacagccccccctccgctgggcactggaaatcctagaatg
gctcctcccacgcgtgactctgctccagctcctgctggacgcaagaaattcacaggactg
gaagcctccaagaaaaccagacgcaagagcagcccccggaagcccatgccgcccagcccc
gagaagacagcaagggacaccccaccgagagacctgaccacccagtccagcaagctgtcc
tccccagccctggtccttgccccagctcacctcctgtcctccagcccccggcccaccagc
aacagcttcccattcttccacctgcctggccccacgcctttcccgatgctgatgggacct
ccaggctccaagggagactgtggcttgccgggtccccctgggctgccgggattacctgga
tctccgggtgcacgaggtcctcggggtcctcctgggccatacgggaacccaggcccacct
ggcccacctggagccaaaggacagaaaggggacccgggactctcaccaggacaggctcat
gatggggcaaagggcaacatgggcttgcctgggctctccggaaatccaggacccttggga
cggaagggacacaagggccatcctggagcagcagggcaccctggagaacagggccagccg
ggacctgcgggcagtccaggggccaaaggttaccctggcaggcagggattccctggacct
gtaggagatcctggccccaaaggcagccggggttacattggactcccagggctcttcggc
ctgccgggatcggatggagagcggggcctccctggtgttcctggcaagaggggcgagatg
ggtaggccgggcttccctggagactttggggaaagaggccctcctggacttgatgggaac
cctggagaaatcggtctgccagggccaccaggagtccccggcctcattggtgacatggga
gcattgggtccacttggctacccaggacccaaaggcatgaagggactgatgggcggcgtg
ggggagtccggactgaaaggtgataagggtgaacaaggggtcccaggtgtgtcgggagat
cccggcttccaaggagacaaggggagtcagggcttgccagggttcccaggtgcccgcggg
aagccagggcctctgggcaaagctggagacaaaggctcacttgggtttcctggacctcct
ggtcctgagggtttcccaggagacattggccccccaggggacaatggtcctgaaggcctg
aagggtaagcctggagcccgaggcctgcctggaccccctgggcagccgggagctgaggga
gatgaaggacccacggggccaccaggagtcccaggcttggagggtcagcctggaaggaag
ggatttcctgggaggcctggcctggatggctcgaagggagaaccaggggatcctggacgg
ccagggcctgtgggtgaacagggacttataggattcattggtctgatcggggagcctgga
atcgtgggggagaagggagaccgtggagtgatgggacccccaggcgcacctggccccaag
gggtcgatgggccatcctggaacgccaggtggtattgggagccctggagagcctggatcc
cggggccctccaggatctcgaggcccgccaggcatgaggggagccaaggggcgccggggc
ccccgaggacctgatggaccagctggggagcaggggtctaagggcctgaagggccgttcg
gggcctcggggcagacctggccagccgggacagcagggtgcagccggtgagcgaggccac
tcaggcgcaagaggcttccttggcatccctggtccctcaggccctccaggtgccaagggt
ctcccaggagaaccgggctctcagggacctcaggggccagttggtcctccaggagagatg
ggacccaaggggccgccgggtgccgtgggagagcctggccttcccggggactccgggatg
aagggtgaccttggacctctgggcccccctggggagcagggcctcattgggcagcgggga
gaaccaggccttgagggagaccttggccccgtggggcctgatgggctgaagggggacaag
ggtgactcaggacctgatggtgaacgtggtgagaagggccaggagggactgaaaggagag
gatgggccccctgggcccccaggcgtcaccggcgtccggggtcccgaaggaaagcctggc
aagcagggtgagaagggccaaatgggagctaagggtgccaagggctaccaaggacacctg
ggggagatgggcatccccggagagcctgggcctcctggcaccccaggtcctaaagggtcc
cggggcaccctaggaccaatgggtgctccaggacggatgggagcccaaggagagccagga
ctggctggctataacggacacaaaggcatcacaggacctctcgggccccctgggcccaag
ggcgagaagggcgaacagggagaggatggcaaggccgaggggccccctgggccgcctgga
gatcggggtcctgtgggcgatcgaggagaccggggggagccaggcgaccctggataccct
ggtcaagagggagttcaaggcctccgtggaaagccgggccagcagggccagcccgggcat
ccaggaccccgggggcggccaggacctaaaggatcaaaaggcgaagagggcccaaaggga
aagcctggcaaggctgggccatcaggccggagggggactcaggggctgcaggggctgcca
gggccccggggcgtggtagggagacagggccctgagggccttgctggacctgacgggacc
cctggcagggatggccagccaggatatcagggagagcagggagctgatggggcccctggc
cccatgggccctgctgggagaagaggaaacccaggtgtggctggcttacctggagcacag
gggcctcccggattcaagggtgaaagtgggttacctgggcaactgggtccccctggaaag
cgaggaacagaaggtggaacaggccttcctgggaaccagggggagccaggagccaaaggc
cagccgggtgactctggcgagatgggcttcccaggagtggctggcctctttggacccaag
ggcccccctggagacattggcttcaaaggcatccaaggcccccgggggcctcctggcttg
atgggaaaggaaggtatcattgggccccccggaatgctaggaccttctggactcccgggt
cccaaaggtgaccgaggtagccgaggggactggggactgcaaggcccaaagggccctcct
ggtccgaggggtcggccaggtccaccgggtcctccttggcatcctgtccagtttcagcaa
gatgaccttggggcagctttccagacatggatggatgctcacggagcagtcagatcagag
caggggtacagctatccggaccagctggtgctggaccagggaggagagatcttcaaaacc
ttacactacctcagcaacctcatccagagcattaagacgcccttgggcaccaaggagaat
ccagcccgggtctgccgggacctcatggactgtgagcagaggatggcggatggtacctac
tgggtagaccccaacctcggctgctcctctgacaccattgaagtctcctgtaacttcaca
cacggtgggcagacgtgtctgaaacccatcacggcctccaaggtggagtttgctgtgagc
cgggtccagatgaatttcttgcacctgctcagctctgaggggacacagcacatcacaatc
cactgcctgaacctgacagtgtggcaggagggcccagggcgcctctctgccaggcaagcc
gtgcgtttccgtgcctggaatggacaggtcttcgaagctgggggtcagttcaggccagag
gtgtccgtggatggctgcaaggtccgtgatggccgctggcaccagacactgttcaccttc
cggacccaggacccccagcagctgcccattgtgagcgtggacaacctcccacctgtctca
tcagggaagcagtaccgcctcgaagtcggacctgcgtgcttcctctga
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