Peromyscus maniculatus bairdii (prairie deer mouse): 102925314
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Entry
102925314 CDS
T11302
Symbol
Ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pmav
Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102925314 (Ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmav03041
]
102925314 (Ddx42)
Enzymes [BR:
pmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102925314 (Ddx42)
Spliceosome [BR:
pmav03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102925314 (Ddx42)
Complex B
102925314 (Ddx42)
Complex C
U2 SnRNP specific factors
102925314 (Ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
102925314
NCBI-ProteinID:
XP_006970570
Ensembl:
ENSPEMG00000006755
LinkDB
All DBs
Position
8:93407669..93453316
Genome browser
AA seq
930 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEAKLPQQSHSAFGASSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWSWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSSAGASGWTSAGSLNSVPTNSTQQGHNSPDSPITSAAKNIPGFNSSGNISSAPVTY
PSVGTQGVNNTASGSNSREGIGGGNGKRERYTENRGGGRHSHGDGGNRHGDGGRHGDGYR
YPESSSRHTDGHRHGENRHGGSAGRHGESRGTSDGRNGESRKEGFNRENRMDPPKVDSSK
IDKVDSKSDKTPDGFAVPEPPKRKKSRWDS
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggaactaagcggggatttggctttggcggttttgcc
atcagtgctgggaaaaaggaggaagccaagctaccacagcagtcccacagtgcctttggg
gcatccagctcgtcctcgggattcggaaagtctgctccaccgcagcttccctctttctac
aagattggatctaaacgggccaactttgatgaagaaaatgcgtattttgaagatgaagaa
gaagattccagcaatgtagatttaccttacattcctgctgaaaactcacctacccgccag
cagttccattctaagcccgcggattctgacagcgatgatgatcccttggaagcatttatg
gctgaagtagaggatcaggcggctagagacatgaagagacttgaagaaaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaagaagatgaccaagaagcttac
tttcgatacatggcagaaaacccaactgctggggtggttcaggaggaggaggaagacaat
ctggaatatgatagtgatggaaatccaattgcaccctccaaaaaaattattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgagaaaaatttttacaatgaa
catgaggagataaccaacctcactccacagcagttaatagacctgcggcataaactcaac
cttcgggtctctggtgctgcaccccctagaccaggaagtagtttcgctcattttgggttt
gatgaacaacttatgcaccagattcggaaatctgagtacacacagccaactccaatacag
tgtcagggtgtacctgtagcattaagtggtagagacatgattggtattgctaaaacaggc
agtgggaaaacggcagcctttatttggcccatgttgattcatataatggatcagaaggaa
ttagaaccaggcgatggaccaattgctgtgattgtgtgtcctactagggagctttgtcaa
cagatccacgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtggcagta
tatggaggagggagcatgtgggagcaggccaaagcccttcaggaaggagcagagattgtt
gtgtgtaccccaggtcggctgattgaccatgtgaagaaaaaagctactaatcttcagagg
gtctcttatcttgtgtttgatgaagccgatcggatgtttgacatgggatttgagtaccag
gttcggtccatagcgagtcatgtccgtcctgacagacagactctgttattcagtgcaact
tttcgcaaaaagattgaaaaattggccagagacatcttaattgaccctattcgagtggtg
cagggcgacattggagaggcaaatgaagatgtgacacagattgtggagatactccattcc
gggcctagtaaatggagctggcttacccggcgtctggtggagtttacttcttcagggagt
gtcctcctgtttgttactaaaaaagccaacgctgaagaactagccaataaccttaagcag
gagggtcataaccttggtctgcttcacggtgacatggatcagagtgaaagaaacaaggtc
atttcagattttaagaaaaaggacatccctgtcctggtggccactgatgttgcagcccgt
ggtctggacattccttcaattaagacagtcatcaactatgatgtagcacgtgacattgat
acccacactcacaggattgggcgaacaggaagagctggtgagaagggcgtggcctatacc
ttactgaccccaaaggacagcaattttgctggggaccttgtccggaacctggaaggagcc
aaccaacatgtttctaaggaactcttagacctggcaatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaaggcaaaaagctgaacattggtggaggaggcttgggctat
agagagcggcctgggctaggctcagagaattcggaccgaggaaataataacaatgtaatg
agcaattatgaagcctacaagccctccacaggagccatgggagatagactgacagcaatg
aaagcagcttttcagtcccagtacaagagtcactttgttgcagccagtttaagtaatcag
aaggctggaagctcttctgctggggcaagtggatggactagtgcaggaagcttaaattct
gttccaactaattcaacacagcagggccataatagtccagacagccccatcaccagtgct
gccaagaacatcccaggcttcaacagttctgggaatataagcagtgccccagtgacctac
ccttctgtcggaacccaaggagtcaacaacacagcttcagggagtaacagccgtgaaggg
attgggggtggcaatgggaagagagagagatatactgagaacaggggtggtggccgtcat
agtcatggagatggtggcaatcggcatggagatggtggtcgccatggagatggataccgt
tacccagaaagcagcagccgtcatactgatggccatcgacacggagagaacaggcacgga
ggaagtgccggcagacatggagagagccggggtacaagtgatggtaggaatggagaaagc
aggaaagaaggctttaatcgtgaaaacaggatggaccctcccaaggtggacagcagcaag
atagacaaagtggacagcaagtcagataagacacctgatggttttgctgttccagagcca
cccaaacgcaagaaaagtcgatgggacagttag
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