Peromyscus maniculatus bairdii (prairie deer mouse): 102928207
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Entry
102928207 CDS
T11302
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04140
Autophagy - animal
pmav04142
Lysosome biogenesis
pmav04145
Phagocytosis
pmav04148
Efferocytosis
pmav05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
102928207 (Vps39)
04142 Lysosome biogenesis
102928207 (Vps39)
04140 Autophagy - animal
102928207 (Vps39)
04148 Efferocytosis
102928207 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102928207 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pmav04131
]
102928207 (Vps39)
Membrane trafficking [BR:
pmav04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
102928207 (Vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
LIF1_N
DUF4145
KCTD11_21_C
EcoR124_C
Hira
Motif
Other DBs
NCBI-GeneID:
102928207
NCBI-ProteinID:
XP_006997029
Ensembl:
ENSPEMG00000005939
UniProt:
A0A6I9ML42
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All DBs
Position
4:complement(97980117..98022063)
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AA seq
886 aa
AA seq
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MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESSSCN
RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF
TCDLKHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG
FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCA
LNWMDIPVAMEHQPPYIIAVLPRYVEIRTLEPRLLVQSIELQRPRFITLGGSNIIYVASN
HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK
RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYL
TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL
RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV
QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLSFLIENFKGLA
IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQSLMKDYLLSLPTGKNPVPAGEEMGELGEY
RQKLLMFLEISSYYEPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAK
EYCHKHYDQNKEGNRDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYS
KLDTTKAINLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ
QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgctttcgagccggttccgatcctggaaaagcttcccctgcaaatcgactgc
ctagctgcctgggaggaatggcttcttgttggaaccaaacaaggacatcttcttctctac
aggattcggaaggatgttgtgccagcagacgtagcctcacctgaaagcagcagttgtaac
aggtttgaggtaacactagagaagtccaataagaacttttccaaaaagatccagcagatc
catgtggtttcccagtttaagattctagtcagcttgttagaaaacaacatttatgtccat
gacttgctgacatttcagcaaatcactacagtttcaaaggccaagggagcatctttgttc
acctgtgacctcaagcacactgagaccggtgaggaggtcctgcgcatgtgtgtggctgtg
aaaaagaagctgcagctgtacttctggaaggacagggaattccatgaactgcagggggac
tttagtgtacctgatgtgcccaagtccatggcatggtgtgaaaattctatctgtgttggc
ttcaagagagactactacctgatcagggtggatggaaaggggtccatcaaagagctcttc
ccaacaggaaagcagctggagcccttggttgcccctctggcagatggaaaagtagctgtg
ggtcaggatgacctcaccgtggtgctcaacgaggaaggcgtctgcacacagaagtgcgcc
ctgaactggatggacatcccggtggccatggagcaccagcctccatacatcattgcggtg
ttaccccgatacgtggagatccgaacactcgaaccaaggcttctggttcagagcattgag
ttgcaaagaccccgtttcattaccttaggaggatcaaacattatctatgtggccagcaat
cattttgtttggagacttattcctgtccccatggcaacccaaatccaacagcttcttcag
gacaagcagtttgaactggctctgcagctcgcagaaatgaaagatgactcagacagtgaa
aagcagcagcaaatccatcacattaagaacttgtatgccttcaacctcttctgccagaag
cgctttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccacgtgatg
ggcttgtaccctgacctgctgcccacagactacaggaagcagctgcagtaccccaacccg
ctgcccacactctctggtgccgaactggagaaggctcacttagctctcattgactacctg
acgcagaaacgaagtcagttggtaaagaagctgaatgactcggatcaccagtccagcacc
tccccactcatggaaggcactcccaccatcaagtccaagaagaagttactgcagatcatc
gacaccaccctgctcaagtgctacctgcatacgaacgtggccctggtggctcccttgctg
cgcttggagaacaaccactgtcacatcgaggaaagtgagcatgtgctgaagaaggctcac
aagtacagtgaactgatcatcctgtacgagaagaaggggctccacgagaaagctctgcag
gtgctagtggaccagtctaagaaagcaaactcacctctgaaaggccacgagaggacggtg
cagtatctgcagcacttgggcacagaaaatctacatttgattttttcctactcggtctgg
gtgctgagagacttcccagaagatggcctgaagatattcaccgaagacctcccggaggtg
gagtctctgccacgagatcgagtgctcagcttcttaatagagaatttcaagggtctggcc
attccttatctggagcatatcatccacgtgtgggaggagacaggctcacgattccacaac
tgcctgatccagctgtactgtgagaaagtgcagagtctgatgaaagactaccttctgtcc
ctgcccacaggtaaaaatcccgtccccgctggagaggaaatgggtgagctgggagaatac
cggcagaagctgctcatgttcttggagatttccagctactatgaaccaggccggctcatc
tgtgactttccctttgatggcctcttagaagaaagagctctcctattgggacgcatgggg
aagcatgaacaggctctcttcatctacgtccacgtcttgaaggacacaaagatggctaag
gagtactgccacaagcactacgaccaaaacaaagaaggcaacagagatgtgtatctgtcc
ctgcttcggatgtacctgtccccccccagcattcactgcctggggccgatcaagctggag
ctcctggagccacaggccaacctccaggctgcccttcaggtcctcgagctgcactacagc
aaactggacaccaccaaggcgatcaaccttctgccagcaaacactcagatcaatgacata
cgcatctttctagaaaaggttttagaagaaaatgcacaaaagaaacggttcaatcaagtg
ctcaagaaccttctccatgctgagttcctgagggttcaggaagagcggattttacaccag
caggtgaagtgcatcatcactgaggagaaggtgtgcatggtgtgcaagaagaagattggg
aacagtgcatttgcaagatacccaaatggagtggttgtgcattacttctgttccaaagag
gtaaactcggccgacacctga
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integrated database retrieval system
