Peromyscus maniculatus bairdii (prairie deer mouse): 102928331
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Entry
102928331 CDS
T11302
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04612
Antigen processing and presentation
pmav05145
Toxoplasmosis
pmav05152
Tuberculosis
pmav05164
Influenza A
pmav05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
102928331 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102928331 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
102928331 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
102928331 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
102928331 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pmav01001
]
102928331 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pmav04054
]
102928331 (Ciita)
Enzymes [BR:
pmav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102928331 (Ciita)
Protein kinases [BR:
pmav01001
]
Serine/threonine kinases: Other
TAF1 family
102928331 (Ciita)
Pattern recognition receptors [BR:
pmav04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102928331 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
102928331
NCBI-ProteinID:
XP_015857929
Ensembl:
ENSPEMG00000009343
LinkDB
All DBs
Position
8:complement(4895987..4945906)
Genome browser
AA seq
1203 aa
AA seq
DB search
MNHFQAILAQVRTLLSNQQPRQVQALLDGLLEEELLSREYHCALLHEPDGEALARKISLT
LLEKGDLDLACSSWICSRLQAPEVERGSSYRDHGGHSLCATMELGLPEGSYLELLNSDAD
PLHLYHFYDQMDLAGEEEIELNSEPDTDTINCDQFSKLLQDMEGDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEAFSESVEVPVEAGLRPQKRRSSEEHSMDPKHRKLAV
PSVVPMLTGSFLMGPASLSTMPYLPPALSNQEPVPSHAYLEEAAQTSAPTSTSSLNCLDL
PLGHIQLLPTLPQGLWQISGADTGLPSVLIYHGEMPQVNQVVPSGSPTVPSLPKSPDRLG
SISPFAPSAADLPSMPEPALTSRAQEMEDTTSPSPCQEDPESSIKLPKWPESVERFQNSL
KDKYQVEPESLSGPLVATELVRARLERGSNKSQERELATPDWTERQLVHGGLAEVLQAVG
ARRRRPRETQVVAVLGKAGQGKSHWARMVSQAWAHGQLPQYDFVFYVPCHCLDRPGDTYH
LQDLLCPPSLQPLVMDDEVLGHIVRQPERVLLILDAFEELEAQDGLLHGPCGPLPPEPCS
FRGLLAGLFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTEQAQTYMRHYFEN
SGTAGDQDKALGLLENQPFLLTHSHSPALCRAVCQLSKALLEQGTETQLPCTLTGLYVSL
LGPAARDSPPGALVELAKLAWELGRRHQSTLQETQLLSVEVRTWAVTQGLVQPTLGTTEA
QLGFSSFLLQCFLGAVWLAQCNDIKDKELPQYLALTPRKKRPYDNWLEGVPRFLTGLVFQ
PRGHCLGALMEPAVTDRKRKVLTRYLKRLKLGTLRAGRLLELLHCAHETQDPGIWEHVAR
QLPGHLSFLGTRLTPPDVHMLGRALETASQDFSLDLRQTGIEPSGLGDLVGLSCVTSFRA
ALSDTMVLWESLRQQGEPQLLQVAEEKFTIEPFKAKSPKDVEDLDSLVQTRRLRNPSEDA
APDLPAIRDLKKLEFALGPVLGPQAFPTLAKILPAFSSLQHLDLDSLSENKIGDEGVSKL
SATFPQLKVLETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNNCICDAGAKSLAQV
LPDMVSLRVMDVQFNKFTAAGAQRLASSLQKCPQVETLAMWTPTIPFGVQEHLQQLDARI
SLR
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgaaccatttccaggccattctggctcaggtgcggacactgctctccaaccagcagccc
aggcaggttcaggccctcctggatggcctgctggaagaagagctgctctcccgggagtac
cactgtgccctgctccatgagcctgatggcgaggctctggcccgcaagatttccctgact
ctgctggagaaaggggatttagacttggcttgctcaagctggatctgcagcaggctccag
gccccggaggtagagaggggcagcagctacagggaccatggaggccatagtctgtgtgcc
accatggaactggggcttccggagggcagctacctggagctccttaacagtgatgccgac
cccctacacctttaccacttctatgaccagatggacctggctggggaggaggagatcgag
ctcaactcagagccggacacagacaccatcaactgtgaccagttcagcaagctgttgcag
gacatggagggcgatgaagagacccgggaggcctatgccaacatcgcggaactggatcag
tacgtgttccaggacacccagttggagggcctcagcaaggacctcttcatagagcacatt
ggagcagaggaagccttcagtgagagcgtggaggtccctgtagaagcaggactgaggcct
cagaagagacgctcctcagaagagcactctatggacccaaagcacaggaagctagctgtg
ccctctgttgtgcccatgctgactggcagcttcctgatggggccagcaagcctctccacc
atgccctacctaccacctgctctgtccaatcaagagccagtacccagccatgcatacctg
gaggaagctgctcagacatccgcgcccacctctacgtcctcattgaactgtttggatctc
cccctcggacacatccagctccttcccaccctgccacaggggctctggcaaatatcaggg
gctgacacagggctccccagtgttctgatctaccacggtgagatgccccaggtcaatcaa
gtagtcccttcaggcagccccactgtccccagcctccccaaatccccagacaggctgggc
tccatcagcccctttgcaccgtctgcggctgacctacccagcatgcccgaacctgcgctg
acttcccgtgcacaggagatggaggacacaacatccccctccccatgccaagaggatccc
gagtcttccatcaagcttccaaaatggccagagtctgtggagcggttccagaactccctg
aaggacaagtaccaggtggagcccgagagcctgagcggtcccctggtagccacggagctg
gtgcgggccaggttggagagaggtagcaacaagagccaggaaagggagctagccactcca
gactggacagagcgccagctagtccatggtggcctggctgaggtgcttcaggctgtcggc
gcccgccgccggcggccacgagagacacaggtggtcgctgtgctgggcaaggctggccag
ggcaagagccactgggcccggatggtgagtcaggcctgggcccatggccagttgccacaa
tatgactttgtcttctatgtcccttgtcactgcttggatcgtccgggggacacttaccac
ctgcaggatctgctctgtcccccaagcctgcagccactggtcatggatgacgaggtctta
ggtcacattgtgaggcaaccagagcgtgtcctgctcattctagatgcttttgaggagcta
gaggcccaagatggcctcctgcatggaccatgtggacctctgcccccagagccctgctcc
ttccgggggctgctagctgggcttttccagcggaagctgctgcgtggctgtaccctgctc
ctcacagcccggcctcggggccgcctggctcagagcctgagcaaggcagatgccatcttt
gaggtgcccagcttctctactgagcaggcccagacgtacatgagacactactttgagaac
tcagggacagcaggggaccaagacaaggccctgggcctcctggagaatcagccttttctc
ctcacccatagtcatagccctgctctatgcagggctgtgtgccagctctccaaggccctg
ctggaacagggcacagagacccagctgccttgcacacttacaggactctacgtcagcttg
ctaggccctgcagccagagacagtcctccaggggccttagttgaactggccaagctggcc
tgggagctgggccgcagacaccaaagcaccttgcaagagacccagttactatcagtggag
gtgaggacctgggcagtgacccaaggcttggtgcagcccaccctggggaccacagaggcc
cagctgggcttctccagttttctgctacagtgcttcctgggtgctgtgtggctggcacag
tgcaatgatatcaaagacaaggagctgccacagtacctggccttgaccccaaggaagaag
agaccctatgacaactggctggagggtgtaccacgctttctgactgggttggttttccag
cctcgaggccactgcctgggtgctctgatggagcctgcagtgacagacaggaaacggaag
gttcttacccggtacctaaagcgcctgaagctggggactctgcgggccgggcggctgctg
gagctgctgcattgtgcccatgagacacaggaccctgggatttgggagcatgtagcacgc
cagctccctgggcacctctccttcctgggcacccggctcacacccccagatgtgcacatg
ctgggcagggccctagagacggccagccaggacttctccctggacctccgtcagaccggc
attgagccctccggactgggggacctcgtgggactcagctgtgtcaccagtttcagggcc
gccttgagtgacacaatggtgctatgggagtccctccggcagcagggagagccacagcta
ctccaggtggcagaggagaagttcaccattgagccatttaaggccaagtctccaaaggac
gtggaagacctggacagcctcgtgcagacccgcaggctgagaaacccctcggaggatgca
gctccggatcttcctgccatccgggaccttaagaagctagagtttgcgttgggtccggtc
ttgggtccccaggctttccccacactggcaaagatccttccagcgttctcatccctgcag
cacctggacctggactcactcagtgagaacaagatcggggacgagggtgtgtcgaagctc
tcagccacctttcctcagctcaaggtcctggagacgctcaacctgtcccaaaacagcatc
actgatgtgggtgcctgcaagcttgcagaagccctgccggccctggccaagtccctccta
aggctgagcttgtacaataactgcatctgtgacgcaggagccaagagcctggcacaagtg
cttccagacatggtgtccctgcgggtgatggatgtccagtttaacaagttcacggctgcc
ggtgcccagcggctggcctccagccttcagaagtgccctcaagtggaaacgctggcaatg
tggacacccactatcccctttggggttcaggaacacttgcagcagctggatgcgcggatc
agcctgagatga
DBGET
integrated database retrieval system
