Planctobacterium marinum: MACH26_07580
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Entry
MACH26_07580 CDS
T09721
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH26_07580 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaw03019
]
MACH26_07580 (deaD)
03009 Ribosome biogenesis [BR:
pmaw03009
]
MACH26_07580 (deaD)
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MACH26_07580 (deaD)
Messenger RNA biogenesis [BR:
pmaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH26_07580 (deaD)
Ribosome biogenesis [BR:
pmaw03009
]
Prokaryotic type
rRNA helicases
MACH26_07580 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
CMS1
AAA_30
Cas3-like_C_2
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
BDX05237
UniProt:
A0AA48KQN0
LinkDB
All DBs
Position
complement(863196..864932)
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AA seq
578 aa
AA seq
DB search
MTSNTIKFSDLKLPQQVLDALDKIGYETPSPIQAEAIPLLAEGHDLIGQAQTGTGKTAAF
ALPMLAKVNPEINSPQLVVLAPTRELAIQVAEAFQAYAAFSDRIRILPIYGGSSYDHQLR
QLKRGVQIVVGTPGRVIDHIKRKTLKLDNVSMLVLDEADEMLRMGFIDDVEWVMEQVPEE
RQIALFSATMPPQIRKIADKFLDNPKTVKIAAKTSTAEKIRQRFCKVSPNNKLEALTRVL
EVEEFDGVIIFVRTKTATTELADKLAARGYDVEPLNGDIQQKSRERTVDRLKQGQIDILV
ATDVVARGLDVDRVSHVINFDIPYDTESYVHRIGRTGRAGREGEAILFISPREMRMLKSI
EKATKQNISPLPIPNVSELNESRLSRFKARVVEALDDTNLDAWGEVIEQIQQETESSPEA
LLAAFASLAQGGEQIFLSEADVPEINVPDRGDRSDRRDRNREGGRDRGRDGGRDGKGRNR
RDNKPDANMQRYKIMVGRKHDVRPGSIVGAIANEAGLDSEFIGAINIYDNFTTVDLPKGM
PSEIRNILKKTRVAGQKLDLTEWQDRPEKSSRPRHKKD
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacatccaataccatcaagttcagtgacctaaaattaccccagcaagtgctggatgca
ctggacaaaatcggctatgaaaccccctccccgattcaagcagaagcaattccgttgctt
gccgaaggccatgacctgattggtcaggcacaaacgggtacaggtaaaaccgccgcgttt
gccttaccgatgttggccaaggtcaacccagaaataaattcaccacaattagtagtgctt
gcgcctacccgtgagctggccattcaagttgctgaagcattccaggcctatgcagcgttc
agtgaccgcattcgcattttgcccatttacggtggttcttcttatgatcatcaacttcgc
cagcttaaacgcggcgtacaaatcgttgttggtacacccgggcgagtaatcgatcacatc
aaacgcaaaaccttaaagctggataatgtcagcatgttggttttggatgaagctgacgaa
atgttgcgcatgggctttatcgacgatgttgaatgggtaatggagcaagtgccagaagag
cgtcaaattgccctgttttccgcaactatgccgccgcaaattcgcaagattgcagacaag
tttttagataatcctaaaaccgtaaaaattgcagccaaaaccagcaccgcggaaaaaatc
cgtcaacgcttctgtaaggtatctcccaacaacaagctggaagccttaacccgcgttttg
gaagtggaagagtttgatggcgtaatcattttcgtacgcactaaaaccgctacaactgag
ttagctgataaacttgctgcccgtggttatgatgtcgagccgttaaatggtgatattcaa
caaaaatctcgtgagcgcactgtcgacagattaaagcaaggacaaattgatatcctggta
gccaccgatgttgtggctcgaggcctggacgttgatcgcgtcagccatgttatcaacttt
gacatcccttacgataccgaaagctacgtgcaccgcattggccgcaccggccgcgctgga
cgcgaaggtgaagcaattctgtttatttcaccgcgcgagatgcgtatgcttaagtcgatt
gaaaaggccacaaagcagaacatttcgccgctgccaattcctaatgtgagcgagctaaac
gagtcgcgcctgagccgttttaaagctcgtgtcgttgaagcattagatgatactaacctt
gacgcctggggtgaggtcatagaacagatccagcaagaaacagaatctagcccggaagca
ttactggcggcatttgccagccttgcccaaggtggagagcaaattttcttgtctgaagca
gatgtaccagagattaatgttcctgatcggggggataggagtgatcgtcgcgaccgcaat
cgcgaaggtggacgtgatcgcggcagagatggcggtcgtgatggcaaaggtcgcaatcga
cgcgacaacaaacccgacgctaacatgcagcgctataagatcatggtgggtcgcaagcac
gacgttcgcccgggcagcattgtcggcgcaattgccaatgaagcgggtctggacagtgaa
tttatcggcgctatcaatatttacgataacttcaccacggttgatttgcctaaaggtatg
ccgagtgaaatccgcaatattctgaagaaaacgcgggtggccggacaaaagctagatcta
accgaatggcaagaccgtccggaaaagtcatctcgcccgcgccataaaaaagactaa
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