Planctobacterium marinum: MACH26_10550
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Entry
MACH26_10550 CDS
T09721
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pmaw
Planctobacterium marinum
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmaw03009
]
MACH26_10550 (rlmD)
Enzymes [BR:
pmaw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MACH26_10550 (rlmD)
Ribosome biogenesis [BR:
pmaw03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MACH26_10550 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_15
PCMT
TRM5-TYW2_MTfase
Methyltransf_11
RrnaAD
MTS
Methyltransf_23
Methyltransf_4
DOT1
Ubie_methyltran
Cons_hypoth95
PrmA
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
BDX05534
UniProt:
A0AA48HPD3
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All DBs
Position
1215997..1217430
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AA seq
477 aa
AA seq
DB search
MVQVFRPKKGPSRKRPVNGKGALRNTGKQHRVTIDHLDHEAKGVVPGAPVMFVSGALPGE
SCRVEESSHQKNVIKANVLEIELASPHRILPFCPHFDACGGCQTQYAEPEYLLSEKQNAV
AKLLAKLTGLSTSDLPWSTPLIGNSRGYRRKVRLAVDARNPEGIKLGFRGEGNNIISVSE
CRVLEPELQNLLQPLHQMLSRLKSVKHLGHVILFSGVLESAQDTSGAGYKPQSYVTLRMT
RAPGSSDKQLLERFQIAQDCLLIIDYGQKRYEWLSGEPALMAYALQSGLAGVAEHDIVLG
ITPDDFVQVNPQLNQAMVQQALGWLALTAQDQVLDLFCGVGNFTLPMAQQCHRVIGFEGV
PEMVQMAQNNAQRNNIHNVEFVSGDLSAADTLKTVSQLKCNKVVLDPARAGAFEAIDTLI
SKTPEAILYISCNPATFGRDIAKLLSANYQLTKLSLIDMFPQTAHTEIMGLFVPARK
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggttcaggtttttcgcccgaaaaagggcccgtccaggaaacgcccggttaacggtaaa
ggtgcgctgcgcaacacaggcaaacaacatcgggtaacgattgatcacctggatcacgaa
gccaaaggcgtggtacccggcgctcccgtcatgtttgtttccggggctttgcccggagag
tcttgccgggttgaggaaagcagtcatcagaaaaatgttatcaaagcaaatgtgctggaa
atagagctggcttcaccccatagaatcctgccattttgtcctcattttgacgcctgtggc
ggatgtcaaacacaatacgcagaacctgaatatttactctcagaaaagcaaaatgccgtt
gccaaattgctggctaaattgaccggcttaagcaccagcgatttaccctggagcacacca
ttaataggcaacagtcgcggttatcgacgcaaggttagattggctgttgacgcccgcaac
cccgagggaataaaactgggctttcgcggggaaggcaataacataataagtgtctctgag
tgtcgggtgctcgagcctgaactgcaaaatctgttgcagccactgcaccagatgttatct
cgtttaaagtcggtaaaacaccttggacatgtcattctgttttcaggtgtattggagtca
gcgcaagacacctctggagcgggttataagccacagagctatgtcaccctgagaatgacc
agagcgccaggttcgtctgacaagcaattgctggagcggtttcaaattgctcaagattgt
ttgctgattatcgattatggccagaaacgttatgaatggctaagtggtgagccagcgctt
atggcctatgcactgcaaagtggtttggctggtgtggcagagcacgatattgtcttggga
atcacgccagacgattttgtccaggtcaacccacaactgaatcaagccatggtacagcaa
gcgctgggttggttggcacttactgcgcaagatcaggtgctggacttgttctgtggagtg
ggaaacttcactttgccgatggcgcaacagtgccatcgcgttattggctttgaaggtgta
cccgaaatggtgcaaatggcgcaaaacaatgcacaacggaataacattcacaatgttgaa
tttgtatcaggcgatctatctgcggcggataccttgaagaccgtatctcagttaaaatgt
aacaaggtggttctggatcccgcgcgagcaggtgctttcgaggcgatagatacgcttatt
tctaagactcccgaagcaatcttgtatatctcctgcaatcctgccactttcggcagagat
attgcaaaattactatccgcaaactatcaattaacaaaattgtctttaattgatatgttt
ccacaaactgcccatacagaaattatgggcttatttgttcccgccagaaaataa
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