Planctobacterium marinum: MACH26_10990
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Entry
MACH26_10990 CDS
T09721
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pmaw
Planctobacterium marinum
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaw03021
]
MACH26_10990 (rapA)
Transcription machinery [BR:
pmaw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
MACH26_10990 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
SNF2-rel_dom
Tudor_RapA
Helicase_C
ResIII
DEAD
Cas3-like_C_2
Flavi_DEAD
AAA_22
AAA_34
Motif
Other DBs
NCBI-ProteinID:
BDX05578
UniProt:
A0AA48HTJ2
LinkDB
All DBs
Position
complement(1256031..1258859)
Genome browser
AA seq
942 aa
AA seq
DB search
MAIQDLPALGQRWLSNAEVELGLGTVVAMDERTISLLFPASGESRNYARKNAPITRVRFA
EGDTATHHEGWQFKINQVIEANETLEYVATRQDTGEAVKVKETFLSHDYVLTEPQDRLFN
GHYDGPRWFDMRKQSIVHRHNHLTSPLLGFLGARVSLIPHQLHIAKEVGQRMAPRVLLAD
EVGLGKTIEAAMIIHQQLLTERAHRVLIVVPDSLVNQWLVEMLRKFNLSFAIFDEERCES
LAEEEGNPFDSEQLVLCSLNFLTHNTRYFQQASESQWDLLIVDEAHHLKWSPGNPSQEYQ
VIDELASKTKGVLLLTATPDQLGHESHFARLRLLDANRFHDYSAFLKEEQEYAQLAETVS
ALLGSAMLTETHYSQLKEKLSDLNHDLAELNSNHSLREQLVTDLLDRHGTGRVLFRNSRK
TISGFPGRYLNAARLDEPVEYAENSDIPKINAHLTPEIYYAGTDLWTDIDTRVNWFLDTL
QSLKGEKVLTICANAITALDLAETLRVKTGMRATVFHEGMSIVERDKAANYFAQSEDGAQ
VLITSEIGSEGRNFQFAHHLVLFDLPLNPDLLEQRIGRLDRIGQKHDIQIHVPVFSSSGQ
DVLLRWFDEGLDAFSHTCPIGATVYDEQSEQLESCLFEPEQSEQLEQLLGQTKQIRQELL
AKLEQGRDKLLELNSSGIGKIEAFVEQLEDSDQSPTLERFMTQLFDTLGILQEEKDDHCY
LLTPTESMVSHLPGLQDEGMTITYERDTATHLEHVHFISWDHPLVHNAIDMLLADVHGKS
SMAFTANKALPAGYYWLECLYVLSAKGDKRLQLNQYFPDTPISFSVSAKAQEEDTFFPLL
DKVPRKIGSQLINALTAQFQKTLAMAEKIGSEKAKAVKQDKVSQIERKLSADIARLKALQ
AVNPSVREEEIQILTQQLEGLLKAANNAQLRLEAVRVVVNNP
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcaattcaagatcttcccgcattaggtcaacgttggttaagcaacgcagaagtagaa
ctgggtctgggcaccgtagtggcaatggacgagagaactatctcattactctttccggca
tctggtgaaagtcgcaattacgcgcgcaagaatgccccgataactcgagtcagatttgcc
gaaggtgataccgccactcatcatgagggttggcagtttaaaatcaatcaagttattgaa
gctaatgagacacttgaatacgttgccacccgtcaggacaccggcgaagctgtgaaggta
aaagaaacctttttatcccatgattatgttttaaccgaaccacaagatcgtttgtttaat
ggtcactatgacggccccagatggtttgatatgcgcaagcaatccattgtgcatcgccac
aaccatttaacctctccgcttttgggcttcctcggtgcacgcgtatctttgatccctcat
cagttacacattgccaaagaggtggggcaacgcatggcccctcgcgtattgttggccgat
gaagtaggcttaggtaaaaccatcgaagccgccatgataattcatcagcaattgctcact
gaacgagcccacagagtgttgattgtggtaccagattcactggtgaatcaatggcttgta
gaaatgctgcgcaagttcaatttgagttttgccattttcgacgaggagcgctgtgagtct
ctcgctgaggaggagggaaatcccttcgacagtgaacagcttgttttatgcagcttaaat
ttcctgacccacaatacccgttactttcagcaagcatcagaatctcagtgggacctgtta
atcgtggatgaggctcaccacctgaaatggtcccccggaaatccttcgcaggaataccaa
gttattgatgagttggccagcaaaaccaagggagtattattacttaccgccacaccagat
cagttaggccacgaaagtcattttgcgcgtttgagattgttggatgccaatcgctttcac
gattacagcgccttcttaaaagaagagcaagaatacgcgcaattggcagagacagtaagt
gcattgctgggttcggccatgctaactgaaacacactacagtcagttaaaagagaaattg
tctgacctgaatcatgaccttgccgaactcaacagcaatcacagtttgcgtgagcagttg
gttaccgatttattagatcgccatggcactggccgagtacttttcagaaactcccgaaaa
actatcagtggtttccccggacgttatctcaacgcagcgcgtttggatgagccagttgaa
tatgctgagaacagtgatatccccaaaattaatgctcacctgacgccggagatttattac
gccggaactgacctctggacagatatcgacaccagagtaaattggttcctcgatactctg
caaagcttgaagggtgaaaaagtactgaccatatgtgccaacgccatcacggcattggat
ctagctgaaaccctgcgggttaaaactggcatgcgcgccaccgtatttcacgaaggcatg
agcatagtagagcgtgataaagccgccaattactttgcccaaagtgaagacggcgcgcag
gtgttgatcaccagtgaaataggcagtgaaggacgtaacttccagttcgctcatcacctg
gtattgtttgacttacccctcaacccggacttgctggaacagcgtatcggtcgcctcgac
cgtatcggtcaaaaacacgatattcagatccatgtgccggtatttagcagttccggacag
gatgtgttgctgcgctggtttgatgaggggcttgatgccttcagccacacttgtccaatc
ggcgctaccgtttacgatgagcaaagtgagcaattagaaagctgcttgtttgaacctgag
caaagtgagcaattggagcagctgttaggccaaactaaacaaattcgccaagagttgttg
gcaaagttggaacaagggcgtgacaaactgttggagctcaactcctcgggtattggcaaa
attgaagcttttgtagagcagttagaagactcggatcaatcccctacccttgaacgcttc
atgactcagctgtttgataccttgggtattttacaggaagaaaaagacgatcattgttac
ctgttgacaccgacggagtctatggtgagccacttgccgggtttgcaggatgaaggcatg
accattacctatgagcgcgacaccgcaacacatctggaacacgtgcactttatcagttgg
gatcacccattagtgcacaacgcaattgacatgttattggcagatgtacacggcaagtct
tctatggcgtttaccgccaataaagccttaccagccggatattattggctggaatgcctt
tatgttttatcggcaaaaggtgataaacgtctgcagttgaatcagtacttccctgacacc
cccatcagtttttccgtgagcgctaaagcccaggaagaagacaccttcttcccgctactg
gataaagtgccacgtaagattggaagccagctgatcaatgctctaacagcccagttccag
aaaaccctggcaatggcggaaaaaattggtagcgaaaaagcaaaagcagttaaacaagac
aaagtcagtcagattgagcgaaagctcagcgcagacattgctcgtctgaaagccttacaa
gcggttaatccctcggtgcgagaggaagaaattcagatactgacgcaacagctagaagga
ttgctaaaggctgcaaacaatgcccagttgcgcttggaagcagttcgcgttgtggttaac
aatccctaa
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