Planctobacterium marinum: MACH26_12280
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Entry
MACH26_12280 CDS
T09721
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
pmaw
Planctobacterium marinum
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmaw03016
]
MACH26_12280 (truB)
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
MACH26_12280 (truB)
Transfer RNA biogenesis [BR:
pmaw03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
MACH26_12280 (truB)
Prokaryotic type
MACH26_12280 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
BDX05707
UniProt:
A0AA48HLF8
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All DBs
Position
1405765..1406667
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AA seq
300 aa
AA seq
DB search
MGRRKSGRKLDGVILVDKPLGGSSNQVLQKVRWIFDANKAGHTGALDPLASGMLPVCFGN
STKFAQYSLDADKTYEVTAKLGIRTTTSDADGEVVEEKSVDVSEQQLDEALDTFRGEIKQ
IPSMFSALKHQGKPLYYYARQGIIIDRPARDITIYELVLREFTGTEISMKVKCSKGTYIR
SLVDDLGQLLGCGAYVTRLHRTEVSGYAGLPMYTPEYLESLRVDGDFSALDQLKLAVDAP
ILHLPKVEVSNKYSERFVQGQAVEGDTSIVVEAVRVYCGERFLGVAQNSKGKLQPKRLVS
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgggaagacgtaagtctggacgcaagctggatggcgtgatcctggttgataaaccgtta
gggggctcttctaatcaggttttacaaaaggtacgttggatatttgatgctaataaagcc
ggtcataccggcgcattggatccacttgccagtgggatgttgcctgtgtgttttggcaat
tccactaaatttgctcagtattcattagacgctgataaaacttatgaagtaacggccaag
ctgggtattcgcaccaccacatctgatgccgatggcgaagtggtagaagagaaatctgta
gatgtttcagagcagcagctcgatgaagctctcgatacttttcgtggggagattaaacaa
atcccatcgatgttttctgctctaaagcaccaaggcaagccactttattattacgccaga
cagggcatcatcatagaccgccctgcacgtgacatcactatttatgaattagtattgcgg
gaattcaccggtactgaaatcagtatgaaagtgaagtgtagtaaaggcacttacattcgt
tcgctggtggatgatttggggcagttgttgggctgtggtgcttatgtcacccgtttgcac
cgcactgaggtttctggctatgccggattgcccatgtatacgcctgaatatctggagagc
ttaagagtcgatggcgatttctcagccttggaccagctcaagctagcagttgatgcaccg
attctacatttgccaaaagtagaggtttccaataagtatagtgaacgctttgtacagggg
caggcggttgaaggagatacctccattgttgttgaagctgtcagagtatattgcggtgag
cgcttcttaggtgtagcccagaacagcaaaggcaaattgcagcccaaaagactggtctct
tga
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