Planctobacterium marinum: MACH26_17070
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Entry
MACH26_17070 CDS
T09721
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MACH26_17070 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaw03400
]
MACH26_17070 (recD)
Enzymes [BR:
pmaw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MACH26_17070 (recD)
DNA repair and recombination proteins [BR:
pmaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MACH26_17070 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
SH3_13
Viral_helicase1
RecD_N
AAA_11
Helicase_RecD
AAA_22
UvrD-helicase
SLFN-g3_helicase
UvrD_C
Arfaptin
DEAD
nSTAND3
PIF1
Motif
Other DBs
NCBI-ProteinID:
BDX06186
UniProt:
A0AA48HGW7
LinkDB
All DBs
Position
1936650..1938596
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AA seq
648 aa
AA seq
DB search
MTVDNKSLLSNSVPGTAMTRRYSQNKIATSATNTELREVLDSLLQHQKIREIDRSFAVFA
AQQSNLQDNQESLLIAMTAALLSEQLGQQHVCLELSTIKQPFAPIYRFPDSAQIAALFSR
AEVAETGLFQLSQARLYLSRYYHYEQDIVAKLNGLSATQFPETAIKDCMDKLYGKPSNDA
EPDWQKTAVALACLKSVAVIAGGPGTGKTTTVVRILWALSQLSQAQGQHKPIIKMVAPTG
KAAARLSESVSGAVSKLPSQDDNLPLECSTIHRLLGARPGSVFFRHNAEHKLNIDVLVVD
EASMIDMPLLAKLLAALPQHCRLILLGDSHQLASVEVGSVFSDICSLKRGENQFNPQLQQ
LLSHLSQQPALAEKRYALSAMHTRQGFIDNIIYLQKSWRFDANSGVGKLAQAINAGDVAQ
TMQVLTASRDDIEWHASAALAEFIRAILPHFETFHEVVAAGNVAGAFEVLSRCQVLAVQR
SGKWGTLNLNKQIQRVLLRADKIKGEAEFYAGRPIMITSNDYQNRLFNGDIGIVMSAAGE
DGLLKVWFADTEQGYRSLLPAQLPAHETLYAMTTHKSQGSEFDKVLMCLPESVPGVPARV
NRELLYTGVTRAKKEFVLFADEQAVRNAVSLQCLRASGLAKALTGGAQ
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgactgtagataataagtccttgcttagcaattccgtaccaggcacagcaatgacgcgt
cgctatagccaaaataaaatagcgacaagcgcaacaaatactgagctgcgggaagtgctg
gatagcttgctgcagcatcaaaaaatccgagagatagatcgcagttttgccgtgtttgcc
gcgcagcaaagtaacttacaggataatcaagagagcctgttaatagccatgacagcggca
ctgttaagtgagcaactggggcagcaacacgtttgccttgaactgagcaccatcaaacaa
ccttttgcgccgatttatcgattccctgatagcgcccaaattgcggcgctttttagccgt
gctgaagtggcagagactggtttgtttcaactgtcgcaagcgcgcttgtacttaagtcga
tattaccattatgagcaggatatcgtggcaaagcttaatggactctcggcgacacaattc
ccggaaacggctattaaagactgcatggataaactctatggaaagccatcaaacgatgct
gaacctgactggcagaaaaccgccgtggcgctggcttgtttaaagagtgttgctgtgatc
gccggcgggccgggcaccggtaaaaccaccacggttgtacgaattttatgggcgctaagc
cagttgtctcaggcacaaggacaacataagccgataattaaaatggtggcacccaccgga
aaagccgcagcgcggctgagtgaatctgtcagcggcgcggtttcaaaattgccatcgcaa
gatgataatttgccgcttgaatgtagcaccatacatcgcttgctaggagcacgtcctggt
tcggtatttttccgccacaatgctgagcacaaactcaacattgatgtcctggtggtggat
gaagcttccatgattgatatgccattgttggcgaaacttctggcggcgttaccacaacac
tgccgtttgatactgttaggcgacagccaccagttggcatcggtggaagtaggctcagta
ttttctgatatatgcagcttaaaacgcggtgaaaatcagtttaacccgcaactgcaacag
ctgttaagccatttgagtcagcaaccggctctggctgagaagcgttatgcattgtcagca
atgcacacccgtcaggggtttattgacaacattatttatctgcaaaaaagctggcgtttt
gatgccaatagcggagtagggaaactggcgcaagctatcaatgccggtgacgttgctcaa
actatgcaagtgttaacggcaagccgagatgatattgaatggcatgcctcagctgccttg
gcggaatttattagggctattttgcctcactttgaaacctttcatgaggttgtcgccgcc
ggaaacgtagccggggcatttgaggtgttatctcgctgtcaggtgttggcagtgcagcgc
agtggcaagtggggcacgctcaatctaaacaaacaaatccaacgggtcctgttaagagct
gacaaaatcaaaggggaggcagagttttacgccgggcgacccattatgatcaccagcaat
gattaccagaatcgcctgtttaacggggatatcggcattgtcatgagtgcggctggtgag
gatgggttgttgaaggtgtggtttgctgacacagaacagggctatcgcagcttattgccg
gcacaattacccgcccacgaaacactttatgccatgaccacccataaaagtcagggctct
gagtttgacaaagtgctaatgtgtttaccagaatccgtacccggagtgcctgccagagtg
aatcgcgaactgctctatactggtgttacccgagcgaaaaaagagtttgtattgtttgcc
gatgaacaagcggtgcgaaatgctgtgagtttgcaatgcctgcgggcatcaggtttggca
aaagcattaactggaggtgctcaatga
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