Planctobacterium marinum: MACH26_22450
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Entry
MACH26_22450 CDS
T09721
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmaw
Planctobacterium marinum
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaw03032
]
MACH26_22450 (topA)
03400 DNA repair and recombination proteins [BR:
pmaw03400
]
MACH26_22450 (topA)
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
MACH26_22450 (topA)
DNA replication proteins [BR:
pmaw03032
]
Prokaryotic type
DNA Topoisomerases
MACH26_22450 (topA)
DNA repair and recombination proteins [BR:
pmaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
MACH26_22450 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BDX06724
UniProt:
A0AA48KSQ2
LinkDB
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Position
complement(2535554..2538205)
Genome browser
AA seq
883 aa
AA seq
DB search
MAKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTKALGKVAPKKPAKELKEYSEE
KKQKYLQQYEYQKLVDRMGVDPQNDWEAHYEIMAGKEKVVSELKKLAKDADHIYLATDLD
REGEAIAWHLQNIIGNKNKTFHRVVFNEITKNAIQEAFKEPGEVNTARVNAQQARRFLDR
VVGFMLSPLLWKKVSRGLSAGRVQSVAVRLVVEREREIKAFIPEEYWDVHADVNNAANTP
FKMLVAKQQGKAFKPVNKAETDAALAVLEKAQYEVVSRESRPTSSRPGAPYITSTLQQAA
STKLGYGVKKTMMLAQRLYEAGHITYMRTDSTNLSAEALGSARGYIESNFGDAYLPEKPN
YYGSKEGAQEAHEAIRPTNVDKLGAFLNDMEKDAQRLYELIWKQFVACQMTPAKYDATTI
TVKAGDFDLTAKGRVLKFDGWTRVQEQIKRKGEEDNSLPDVKEGEILNLMQLEPKQHFTK
PPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLEQRRFYAEKMGEIVSDRLLE
KFNDLMSYDFTANMERHLDEIADGKLNWKQVLDQFYDGFYKKLLAAELPAEEGGMSSNKS
VETDIPCEKCGRTMMIRTSSTGQFLGCTGYNLPPKERCTNTMNLTSADEVVDLDKEDEAE
AQVLRTRHRCHICSTSMDSYVIDEKRKLHICGNSPTCPGYEIEQGNFKIKGYDGPVIECD
RCEAPMELKTGRFGKYFKCTNEECTNTRKLLKNGEVAPPKSDPVDLPELPCTKSDAHFVL
RDGAAGIFLAAHNFPKSRETRAPLVEELQRFKDRLPEKLRYLADAPAVDNEGNKTLVRFS
RKTKQQYVSSENEKGKATGWTAWFKDNKWEIEEPKKAAPKKAK
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtcgctcgttattgtggagtcgcccgccaaggcgaagaccataaataaatat
ttgggaaaggattttattgttaaatccagtgtagggcacgtaagagatctgcctacaaaa
gcattgggcaaagttgccccgaaaaaaccagcaaaagaattaaaagagtacagcgaagag
aaaaagcaaaaatacctccagcaatatgaataccaaaaactggtagatcgcatgggcgtg
gatccccaaaatgattgggaagcgcattatgagataatggctggcaaagagaaggttgtc
agtgagctgaaaaaactcgccaaagatgcagaccacatctatctcgcaacggatttggat
agagaaggggaagccatcgcctggcacctgcaaaatattattggcaataaaaataaaacc
tttcatcgcgtggtgtttaacgagatcactaaaaatgccattcaggaagcatttaaagag
ccgggggaagtcaacacagcccgcgtaaatgcccagcaggcccgccgtttccttgaccgt
gttgttggttttatgctgtcgccattgttgtggaaaaaagtatccagaggtttatctgca
ggacgggtacaatcggtagccgtgcgcttggtggtagagcgagagcgagaaattaaagcc
tttatcccggaagaatactgggatgtgcatgccgatgtgaacaacgccgcaaacacgcct
tttaagatgttggttgccaagcagcaaggcaaagcctttaaaccggtaaataaggcagaa
actgacgccgcattagctgtattggaaaaagcgcaatacgaagtggtgagccgcgagtct
cgccccaccagtagtcgtccaggcgcaccttatatcacctcaactctgcagcaagcagcc
agcactaagctgggctatggggtgaaaaagaccatgatgttggcacagcgtctttacgaa
gcgggccacatcacctatatgagaaccgactcaaccaacttgagtgccgaagccttgggc
agtgctcgcggttacatcgaaagtaactttggcgacgcctacttacctgaaaaacctaac
tattacggtagtaaagaaggcgctcaggaagcccacgaagcaatcagaccaactaacgtc
gacaagctgggggctttcctcaatgacatggaaaaagacgcacagcgtctttatgagctc
atctggaagcaattcgttgcctgtcaaatgacgccagctaaatacgacgccactaccatt
acggtaaaagccggtgacttcgatttaacggcgaaaggccgggtgttgaagtttgatggt
tggacacgtgtgcaggaacaaatcaagcgtaaaggcgaagaagacaacagtttgccagat
gtaaaagaaggcgaaattctgaatttaatgcagcttgagcctaagcaacattttaccaag
ccgccagcgcgattcagcgaagccagtttggtaaaagagctggaaaagcgcggtattggg
cgaccttccacttacgccagtatcatttccaccattcaggacagaggttacgtgcgcctt
gagcagcgtcgcttctacgccgaaaaaatgggggaaatcgtcagcgaccgattgttggaa
aagttcaatgatctgatgagctacgattttaccgccaacatggaacgacacctggatgag
attgccgacggcaaattgaactggaaacaggttctggatcagttttacgatggcttctac
aaaaaattgttggctgcggagctacctgctgaagaaggcggtatgagcagtaacaagtcg
gtagaaaccgatattccttgtgagaaatgcggtcgtactatgatgatccgtacctcgtcc
accggacaattcctgggatgtacagggtataacttgcctcccaaagagcgctgcactaat
accatgaacctcacttctgccgacgaagtggtggatctggataaagaagacgaggcagaa
gctcaggtattgagaactcgccatcgctgccatatttgcagtacgtctatggacagctac
gttatcgatgaaaagcgcaaactgcacatatgcggtaatagtcccacctgtccgggctac
gaaatcgagcagggcaactttaagatcaaaggctacgatggcccggtgattgagtgtgat
cgctgtgaagccccgatggagctgaaaacagggcgttttggtaaatactttaagtgtacc
aacgaagaatgcaccaatacccgcaaactactgaaaaacggcgaggtggcaccgcccaaa
tccgatccagtggatttaccggaattgccctgtaccaaatctgatgcccactttgtgctt
agagatggtgcagcagggattttcctggcagcccataactttccgaaatcccgtgaaacg
cgtgcaccattggtggaagagctacaacgctttaaagaccgtttgccagaaaagttacgc
tacctggctgacgcacctgctgtggataatgaaggtaataagaccctggtgcgctttagt
cgtaaaaccaagcagcaatacgtttcttcggaaaacgaaaagggtaaagccacgggttgg
acagcctggtttaaagataacaaatgggaaatagaagagcccaaaaaagcagcgccgaaa
aaagccaaatag
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