Planctobacterium marinum: MACH26_35520
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Entry
MACH26_35520 CDS
T09721
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MACH26_35520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaw03021
]
MACH26_35520 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmaw03400
]
MACH26_35520 (rpoC)
Enzymes [BR:
pmaw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MACH26_35520 (rpoC)
Transcription machinery [BR:
pmaw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MACH26_35520 (rpoC)
DNA repair and recombination proteins [BR:
pmaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MACH26_35520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDX08031
UniProt:
A0AA48HKD0
LinkDB
All DBs
Position
complement(4059933..4064117)
Genome browser
AA seq
1394 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDQIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLTEEEYLDSLEEHGDEFEAKM
GAEAVFDLLQELDVDADVAAMREELPSINSETKKKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREAAEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRARVNAKGEGMVFANKEEAEKAYRTG
QAELHARVKVRLTEVEIDIDGNRHEKTSVVETTVGRAILFGILPEGMPFELINQPMGKKQ
ISKLLNACYRRLGLKDTVITADQVMYTGFHYAMKSGVSIGIDDMVIPDEKSEIIDAAEAE
VTEIQEQFQSGLVTAGERYNKVIDIWSAANERVAKAMMSNLSTEEVLNRDGEHEKQDSLN
SVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVINNDDCGTFDGIVMKPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTTEVLVERNVLLDEKLVDFLESHSVDQVIVRSVITCENDFGVCAKCYG
RDLARGHMVGAGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQIKNNGHLKL
HNAKYVTNTDGKIVIVSRSTELTVIDEFGREKERYRLPYGAKLSVDDGAAVEAGAIVANW
DPHSHPIVVERKARVSFSDVDDSNTEMQQDDLTGLSRIVVKDLSLANAKEPKLILEIEEV
GLQEIRLPSFTTIDIADGATAEVGDTIARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLTITPKEGDHHEEMIPKWRQINVFEGENIEKGEVIADGPE
SPHDILRLRGVSAVSNYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITDPGDTMFL
EGEQCEVSTVHIANRELEKAGKLTAKYELQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKTDDLRGLKENVIVGRLIPAGTGLAYHKKRLANKMDAMEDLSVSAEEAEAALTEAL
NAEVLGADNSASEE
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaacaaaactgaagaattcgatcagatt
cgaatcggtctggcttcgcctgacatgatccgcagctggtcgtacggggaagttaaaaaa
cccgaaacgattaactaccgtaccttcaagcctgagcgtgatggtttgttttgtgcgcgt
atctttggcccggtgaaagactacgaatgtttgtgtggtaagtacaagcgtcttaagcac
cgtggtgtaatttgtgagaagtgtggcgtagaagttaccctgaccaaagttcgtcgtgag
cgtatgggtcacattgaactggcaagcccggttgctcacatctggttcctgaaatcactg
ccgagccgtattggtttgatgctggatatgaccttgcgtgatatcgagcgcgtgctgtat
ttcgaatcttatgttgttaccgagccaggtatgacaacgcttgagcgcagccagcttctg
actgaagaagaatatctggactcgctggaagagcacggtgatgagtttgaagcaaaaatg
ggtgccgaagcggtattcgatttgttacaagagcttgacgtggatgcagatgttgctgca
atgcgtgaagagttgccttcaatcaactctgaaactaagaaaaagaaaatcaccaagcgt
cttaaattattagagtcgttccaacaatctggtaacaagccagagtggatgatcatgacg
gttctgccggtattgccgccagacttgcgtccattggtaccactagatggtggtcgtttt
gcgacgtctgatttgaacgatttataccgtcgtgtaatcaaccgtaacaaccgtctgaag
cgtctattagaccttgctgcacctgacattatcgtacgcaacgaaaagcgtatgctgcag
gaagcggtagatgcgttattagataatggtcgtcgcggtcgtgctatcaccggttctaac
aagcgtcctttgaaatctttggctgatatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctaggtaagcgtgttgattactctggtcgttctgtaatcaccgttggtccaaca
ctgcgtctacaccagtgtggtctgcctaagaaaatggcattggaactgttcaagcctttc
atctacggtaagttagaaggtcgtggtcttgctactaccatcaaagctgccaagaaaatg
gttgagcgcgaagcggcagaagtatgggacgttctggatgaagttatccgcgaacatccg
gtactacttaaccgtgcaccgactcttcacagactgggtatccaggcatttgaacctatc
ttgatcgaaggtaaagcgatccagctgcacccactcgtatgtgcggcctataacgccgac
ttcgatggtgaccaaatggccgttcacgtaccactgacgctagaagcgcagttggaatca
cgtgccctgatgatgtctaccaacaacatcctgtctcctgcgaacggtgagcccatcatc
gtaccttcacaggacgttgtattgggtctgtactacatgacccgcgcccgtgttaacgct
aaaggcgaaggcatggttttcgcgaacaaagaagaagcagaaaaagcctaccgcacaggc
caggcagaactgcacgctcgcgttaaagtgcgtttaactgaagttgaaatcgatatcgat
ggcaatcgccacgaaaaaacctctgtagtagaaactaccgttggtcgtgcaattctgttc
ggtatcttaccagaaggcatgccttttgagctgatcaatcagccaatgggtaaaaagcaa
atctcaaaattattgaacgcttgctaccgtcgtttgggtctgaaagacaccgtaatcacc
gctgaccaggttatgtacactggtttccattatgcgatgaagtctggtgtgtctatcggt
atcgacgacatggttattccagatgagaagtctgaaatcatcgacgcggctgaagctgaa
gtaactgaaattcaggagcagttccagtctggtttggtaaccgctggtgagcgttacaac
aaagtaatcgatatctggtctgcagctaacgaacgcgttgctaaggcgatgatgagcaac
ttgtctaccgaagaggtgttaaaccgcgacggtgagcacgagaagcaagattcacttaac
tctgtatacatgatggcggactccggtgctcgtggtagccccgctcagattcgtcagttg
gccggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacccccattacc
gctaacttccgtgaaggtctgaacgtacttcagtacttcatctcaacccacggtgcacgt
aaaggtttggccgatacggcattgaagacagctaactcaggttacctgacgcgtcgtctg
gttgacgttgctcaagacgttgttatcaacaacgacgactgtggcacctttgacggtatc
gtcatgaagccgttgattgaaggtggtgacgttgtggagccattgcgcgagcgcgtattg
ggtcgtgttgttgccgaagacgtattaaaaccaggtactactgaagtcttggttgagcgt
aacgtactgcttgacgaaaaactggtggacttccttgagtctcactcagtagaccaggtt
atcgttcgctcggtaattacctgtgaaaacgacttcggtgtgtgtgctaagtgttatggt
cgtgaccttgcacgaggtcacatggttggcgctggtgaatctgtgggtgtaatcgccgca
cagtcaatcggtgaaccaggtacacagttaacgatgcgtaccttccacatcggtggtgcg
gcatcaagagcgtctgcagaaaacagcgtacagatcaaaaacaatggtcacctgaaactg
cacaatgctaagtatgtaactaacactgacggcaagattgttatcgtatcgcgttcaact
gaactgacggtaattgatgagtttggtcgtgagaaagagcgttacagattgccttacggt
gcgaaattgtcggttgacgatggtgcagcagtagaagctggcgcgattgtagcgaactgg
gatccgcactcccacccaatcgtggtagagcgtaaagcgcgagtaagcttctctgacgtt
gatgattccaatacagagatgcagcaagacgacctgactggtctgtcgcgtatcgtggtt
aaagacctgtccctggccaatgctaaagagcctaaactgattctggaaattgaagaagtg
ggcttacaggaaattcgtctgccaagctttaccactatcgatattgccgatggtgcaacg
gctgaagtgggtgataccattgcgcgtattcctcaggaaagctcgaagactcgtgacatc
acgggtggtctaccgcgggtagccgacttgttcgaagcgcgtaagcctaaagagcctgcg
attctggctgaaatctccggtaccatcggtttcggtaaagaaaccaaaggtaagaagcgt
ctgacgattacaccgaaagagggtgatcaccacgaagagatgattcctaaatggcgtcaa
atcaacgtattcgaaggtgagaacatcgaaaaaggtgaagttatcgctgacggtccagag
tcgccacacgatatcttgcgtctgcgtggcgtaagcgcggtatctaactacatcgtgaac
gaagttcaggaagtttatcgcttacagggtgtaaaaattaacgataagcacatcgaggtt
gtaattcgccagatgttgcgtaagtgtattatcactgatccaggtgacactatgttcctg
gaaggcgaacagtgcgaagtatcgacggtacacatcgcgaaccgtgaactggaaaaagcc
ggtaaattgacagctaaatacgaactgcaattgttgggtatcactaaggcatcactgtcc
actgaatccttcatctcagcagcttcgttccaggaaactacgcgggtactgacagaagct
gcggtacaaggtaagacagatgatttacgtggtctgaaagaaaacgtaatcgttggtcgc
ttgatcccagcaggtactggtttggcgtatcacaagaaacgtcttgctaacaagatggac
gccatggaagacctgtctgtttctgccgaagaagcagaagcagcactgactgaagcactt
aacgcggaagttttgggagcggataactctgcttctgaagagtaa
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integrated database retrieval system
