Planctobacterium marinum: MACH26_35710
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Entry
MACH26_35710 CDS
T09721
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH26_35710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaw03019
]
MACH26_35710
03400 DNA repair and recombination proteins [BR:
pmaw03400
]
MACH26_35710
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MACH26_35710
Messenger RNA biogenesis [BR:
pmaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH26_35710
DNA repair and recombination proteins [BR:
pmaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MACH26_35710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
HEM4
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDX08050
UniProt:
A0AA48I0K7
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All DBs
Position
4098478..4100406
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AA seq
642 aa
AA seq
DB search
MEEPQLVTCLEQQFGFSEFRAGQSQTIQNLLAGNSSLAIFPTGSGKSLCYQFSATQLSHL
TLVVSPLLALMKDQLDFLASKNIPAASIDSSLTPEQNNKVMADIKAGQLKILMVSVERFK
NERFRNFINQVPISMLVIDEAHCISEWGHNFRPDYLKLPTYRHQLNIPLVLLLTATATRK
VKQDMAAKFGIEQAHIVQTGFYRNNLNLQVLPVSEAEKNTQLSKLIQQQKGAGIIYVTLQ
QSAEQLAAKLTAQGHSAVAYHAGLKDENRQNIQQRFMHGEVDIVVATIAFGMGIDKADIR
YVIHYDLPKSIENYSQEIGRAGRDGKPSICTVLANSNSLNTLENFIYGDTPELNAIEQVI
DNIKKADSGQWELLLYQLSNQCNIRQLPLKTLLVQLELKGIIKAKYSYFAEYKIKCLQEP
ETIVNRFAGERSQFIKSIFNATQFKKTWGILDFETLQSHYPCERSRVLTALDYLHGLQLI
ELKASNMTEVYQVDQLALQSDELAPQLADYFKQNEGSEIKRIAALLRLLQLENCLSHNLA
AYFDDRHAPENCTHCSVCDGNKALLPAPETPPMPEQQKLSDILAQLRNHLNTDYFSDTLA
ARFLCGLTQPIFTKTKARQLNGWGICEQQRYEDVRLTVQSLL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggaagagccacaacttgtaacatgtttagagcagcagtttggcttttctgagtttcgc
gccgggcaaagtcaaaccatacaaaatttgcttgcaggcaactcttctttagccattttc
ccaacgggttcgggaaaatccttgtgttatcagtttagcgccacgcaactatcgcattta
acccttgtagtctcccctttactagcgttgatgaaggatcagctagactttttggccagt
aaaaatattccagccgccagcattgactcatcactgacaccggaacaaaacaacaaggtg
atggcagatattaaagccggccaacttaaaattctgatggtgtcagtagagcgctttaaa
aacgagcgcttccgcaattttataaaccaggtgccaatatcaatgctggtgatagacgag
gcccattgcatttcggaatggggacacaactttcgtcctgattatttaaaattacccact
taccgacatcagttaaacatccccttggtgctgttattaaccgcaacggccacccgcaaa
gtaaagcaggatatggcagccaagtttggtatcgaacaagcacatattgtgcaaacaggt
ttttaccgcaacaacttaaacctgcaagtattacccgtttcggaggcagagaaaaacaca
caattgagcaagctaatacagcaacaaaaaggcgctggcattatttacgtgaccctgcag
caaagtgctgaacagctggcggctaaactcaccgcacagggtcacagtgcagtggcgtat
cacgccgggctaaaagatgagaacagacaaaacattcaacagcgatttatgcatggcgaa
gtggacatagtggtagccacaatcgcttttggcatgggtatcgataaggccgacatccgc
tatgtgatccactatgatctgcctaaatccatcgagaactacagtcaggaaatcggccgg
gctggtcgcgacggcaaaccttcgatatgcaccgttctcgccaatagcaacagtctgaat
acactggaaaactttatctatggcgatacgccggaactcaacgctattgagcaggtaata
gacaacattaaaaaggccgattccgggcagtgggaactgctgctttatcagctgagcaac
cagtgcaacattcgccagttgcctcttaaaacactcctggtgcagttggaattaaaaggc
ataatcaaagccaaatacagttatttcgccgaatataaaatcaaatgcttacaagaacca
gaaaccattgtaaaccgctttgcaggtgaacggagtcagtttatcaaatccatctttaac
gcaactcagtttaagaaaacctggggcatcctggacttcgagacgctgcagagccattac
ccctgtgagcgcagccgagttttaaccgcactcgactatctgcatgggctgcagcttatc
gagttaaaagccagcaacatgactgaagtgtatcaggttgatcaactcgccttacaatcc
gatgagcttgcgccacaactggcagactactttaaacaaaatgaaggttctgaaattaaa
cgtatcgccgcgctgctgcgccttttgcagttagaaaactgtttgagtcacaaccttgca
gcctattttgatgatcgacacgccccggaaaattgtactcattgttccgtttgcgatggc
aacaaggcactattacctgcgcctgaaacaccgccgatgccagagcaacaaaagctaagc
gatatccttgctcaattgcgcaatcacctcaacaccgactatttctcagataccctggcg
gcgcgctttttatgtggcttaacccagccaattttcaccaaaaccaaggcccggcagtta
aatggctggggcatctgcgaacaacaacgctatgaagatgtcagactaacagtgcaaagt
cttttgtag
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