Planctobacterium marinum: MACH26_40550
Help
Entry
MACH26_40550 CDS
T09721
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH26_40550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaw03019
]
MACH26_40550
Messenger RNA biogenesis [BR:
pmaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MACH26_40550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
ZrgA
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
BDX08534
UniProt:
A0AA48HV42
LinkDB
All DBs
Position
4679716..4681038
Genome browser
AA seq
440 aa
AA seq
DB search
MWFLPLGGTGEIGMNLNLYGHDGAWLMVDCGITFDAKIDDQQAHKFDIVAADPSFISKRK
EQLCGIVISHAHEDHIGALARLWRRFKADVYTTPFTAEILRRKFQREGEKRPPVIHEVTE
YEIHHIGPFEVQWHPMNHSLPEPFGLSLKTQAGSVFHSADWKLDNKPVLGKPLNPNALKR
LTRYNFLATVCDSTNALKPGYSLSEHDCYEGLKAHIAQAQGRVAVACFSTNIARLISLAR
IANETGRYFALLGRALENTVAVARLTGHWPEDLTIQDPNTVGYLPPDEVLVAVTGSQGEE
RAVLNRMADGYYRQIDLDKGDTVIFSSVIIPDNELKIERLVNKLKAHNIAVVQAETSNIP
VHASGHPNEEELRHFYKALQPQIAIPTHGEAAHMERNAQIAKECHVPTQLTGFNGDLFKI
APEAQVIKGFAPVGRIPLAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
ttgtggtttttgcctttgggcggcacgggtgaaattggcatgaacctgaatttatacggt
catgatggtgcctggttaatggtggattgtggcattactttcgatgctaaaattgatgat
caacaggcacacaaatttgatattgtggccgcagatccgagctttatcagcaaacgcaaa
gagcagctttgcggtattgtgatcagccacgcccacgaagatcatatcggtgcccttgcg
cgcttatggcggcgctttaaagctgacgtctacaccacaccctttaccgcagaaatactg
cggcgcaaatttcagcgagagggagaaaagcgcccgccagtgatccacgaagtcaccgaa
tatgaaattcatcacataggtccatttgaggtgcaatggcatcccatgaatcactcactg
cctgagccatttggtctttctctgaaaacccaggccggcagtgtcttccacagcgcagac
tggaaactggataacaagccagtgctgggcaaaccactaaaccccaatgccttaaaacga
ctgaccagatacaacttcctggcgacagtgtgtgattccaccaatgccttaaaacccggt
tattcgctgtcggagcacgactgctacgaaggactcaaggctcatatcgctcaggcccaa
ggccgggtggcagtggcttgttttagtaccaatattgcgcgactgatttcactggcccgt
atcgccaatgaaacggggcgctactttgccctgttgggcagagcattggaaaacacagtg
gcggtggcacgactcaccggccattggcctgaagatctcactattcaggatcccaacact
gtcggttatttaccgcccgatgaggtactggtagcggttaccggcagtcagggagaggag
cgagcggtactaaatcgcatggctgatggctactataggcaaatagacctggacaaaggg
gacacggtaatattcagttcggtcattattcccgataacgaactcaaaatagagcgtctg
gttaataagcttaaagcccacaatattgcggtggtgcaagccgaaaccagtaatattcct
gtgcatgcctcaggtcatcccaacgaagaagaattgcgccacttttacaaagctttgcaa
ccacagattgccattcctactcatggtgaagctgcccacatggagcgcaacgcccaaatt
gctaaggaatgtcatgtaccaacacaattaacggggttcaatggcgacctgtttaaaatc
gctcctgaggcacaagtaataaaaggatttgctcccgttggcaggatccccttggctgag
taa
DBGET
integrated database retrieval system