Planctobacterium marinum: MACH26_40620
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Entry
MACH26_40620 CDS
T09721
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03420
Nucleotide excision repair
pmaw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MACH26_40620 (uvrD)
03430 Mismatch repair
MACH26_40620 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaw03400
]
MACH26_40620 (uvrD)
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MACH26_40620 (uvrD)
DNA repair and recombination proteins [BR:
pmaw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MACH26_40620 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
MACH26_40620 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDX08541
UniProt:
A0AA48HLA5
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All DBs
Position
complement(4687057..4689225)
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AA seq
722 aa
AA seq
DB search
MDVSRLLDNLNDKQRSAVAAPAQDMLVLAGAGSGKTRVLVHRVAWLMEVEGLAPHNILAV
TFTNKAAKEMRGRVEELMGRSLHSMWMGTFHGLAHRLLRAHYADVNLPDSFQILDSDDQY
RLIRRILKSMNLDEKHWAPKQVQWYINGNKDEGLRPHQIDTRDDYTQKKMAEIYKVYQDT
CDRSGLVDFAELLLRAHELWVNNPSILAHYQRRFRAILVDEFQDTNNIQYAWLRLLSGEG
NNTMIVGDDDQSIYGWRGANVENIHNFLRDYVGAETIRLEQNYRSTGVILKAANAVIDNN
QGRLGKELWTEQAEGEPIKVYAGFNEVDEARFIISKIKTWLEQGNALQDCAILYRNNAQS
RILEEALLHESIAYRIYGGMRFFERQEIKDALAYLRMMNHPLDDAAFERVVNVPARGIGE
KTLAQIRELARENQQSLWQTGMLMVAEKRLSSRASNALKSFIDMVLTLQEDLAELGLERQ
ADEAIKRSGLYAMYQAEKGEKARARIENLEELVTACKQFVVPEEAEEMTPLAAFLAHASL
EAGETQADKHQDAVQMMTIHSAKGLEFPLVFIAGVEEGMFPSQMSNEEPGRLEEERRLCY
VGMTRAMEQLYLTWAESRRLYGQDKFHTMSRFIKEMPSDCMEEVRLRTTVSRPVYNRFEN
RTSHEAFVDSGMQLGQRVMHPKFQEGTVINMEGQGEHARIQVNFDDFGSKWLVMSYARLT
KV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctcacgcctactggataacttaaacgataaacagcgcagtgccgtggccgca
cctgcacaagatatgctggtactggcgggggccggtagcggtaaaacccgcgtgttggtg
caccgagtagcttggttaatggaagtcgagggcttagcgccacacaatattttagccgta
acctttaccaacaaagctgccaaagaaatgcgcggtagggtggaggaactgatgggccgt
tcgctacactccatgtggatgggtacctttcacggccttgctcaccgcttattgcgcgcc
cattatgccgatgtcaatctgccagatagttttcagattctggactccgatgatcaatac
cgtttgattcggcgcatcttaaaatccatgaacctggatgaaaaacactgggctcccaag
caggtgcaatggtatatcaatggcaataaagacgaaggattacgcccgcatcaaatagat
acccgcgacgattacacccagaaaaaaatggccgagatatacaaggtttatcaagatacc
tgtgatcgctccgggctggtggattttgccgaattgctattacgtgcccatgagctatgg
gtgaataatccaagcattcttgcccattatcaacgccgttttcgcgccatcctggtggat
gaatttcaggataccaataacattcaatacgcctggctcagattgctaagtggcgaaggc
aacaataccatgatcgtgggggacgacgatcagtctatttatggttggcgtggtgccaat
gtggaaaacattcacaatttcttgcgtgattatgtgggcgccgagacgattcgtctggaa
caaaattaccgctctaccggcgtgatcctgaaggccgctaatgctgttatcgacaataac
caagggcgtttgggtaaggagctttggacagagcaggcggaaggcgagcctatcaaggta
tatgccggttttaatgaggtggatgaggcacgctttattatttccaaaatcaaaacctgg
cttgaacaaggcaatgcgctgcaggattgcgctattttatatcgcaacaatgctcagtct
cgtattctggaagaggcgttattgcacgaatcgattgcctatcgcatctatggcgggatg
cgtttctttgaacggcaggaaatcaaagatgccttagcttacctacggatgatgaaccac
ccgctggatgatgccgcttttgagcgagtggtaaacgtccctgctcgtggtatcggtgaa
aaaaccctggcacaaatccgtgagttggcgcgggaaaaccagcaatcactgtggcaaacc
ggaatgctgatggtggctgaaaaacgcctgtcttctcgcgccagtaacgccctgaaaagt
tttatcgatatggtactcactctgcaagaggacttggctgagctaggtttggagcgtcag
gcagatgaagccattaagcgctcgggtttatatgccatgtatcaggcggaaaaaggtgaa
aaagcccgtgctcgcatcgaaaacctggaagagctggtgacggcgtgtaaacaatttgtg
gtgccagaagaagcagaggaaatgactccactggcggcatttttagctcatgcttctctt
gaggcgggggaaactcaggccgacaagcatcaggacgcggtacagatgatgactattcac
agcgccaaaggccttgagtttccgctggtgtttattgctggtgtagaggaaggcatgttc
cccagccagatgagtaatgaggaaccgggccggttagaagaagagaggcgcttgtgctac
gtgggtatgacgcgcgcgatggagcagttgtatctcacttgggcggaaagccgccgtctt
tatggccaagacaagttccatactatgtcgcgttttatcaaagagatgccctctgattgt
atggaagaggtgcgtttgcgtaccacagtatctcgcccggtgtacaatcgcttcgaaaat
cgcacctctcatgaagcattcgtagattcaggtatgcaattagggcagcgagtgatgcac
cccaaattccaggaaggcacggtgatcaatatggaaggccagggtgaacatgcacgaatt
caggtcaactttgacgattttggcagcaaatggctggtaatgagctatgctcgtttgact
aaagtctaa
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