Planctobacterium marinum: MACH26_40800
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Entry
MACH26_40800 CDS
T09721
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pmaw
Planctobacterium marinum
Pathway
pmaw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MACH26_40800 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaw03019
]
MACH26_40800 (rhlB)
Enzymes [BR:
pmaw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MACH26_40800 (rhlB)
Messenger RNA biogenesis [BR:
pmaw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MACH26_40800 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
DapB_N
Motif
Other DBs
NCBI-ProteinID:
BDX08559
UniProt:
A0AA48HNN2
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All DBs
Position
4702567..4703814
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AA seq
415 aa
AA seq
DB search
MQTTHLTETHFSDLNIHPKILEALQAASFEHCTPIQALALPQSLNGQDVAGQAQTGTGKT
IAFLVATFNYLLTHEKDKTGQPRAIIMAPTRELAVQIHKDAEIIAKHTDISLGLIYGGEG
YQSQQETLQKGVDIVIGTTGRIIDYYKQQVFSLANIQVAVLDEADRMFDLGFIKDIRFLF
RRMPPAVNRLSMLFSATLSFRVQELAYEHMDNPVHVQVEPEQRTASRIVEELFYPSDSDK
MKLLLTLLEEDWPEKAIVFANTKHTCELVTDWLNADKHRAGLLSGDVPQKKRLNILEDFD
KGHLDILVATDVAARGLHIDKVSHVYNYDLPDDAEDYVHRIGRTGRAGKSGHAISFACEK
YALNLPAIETYIGHTIPVTDYFHDVLLDDVTPPRRTQRKRVHRDKRNNQKRHNNR
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaacacatttaacagagacccacttttcggatctaaacattcaccccaagatt
cttgaggcacttcaggcagccagttttgaacactgcaccccaatccaggcgctggctcta
ccccagtcgctaaacggccaagatgttgctggacaggctcaaacgggcacgggtaagacc
attgcgtttttggtggccacctttaattatctgctcactcatgagaaggataaaaccggg
caaccacgcgctatcattatggctcctacgcgtgaattagcggttcagatccacaaagat
gcagaaataatcgcgaaacatactgatatctcccttggtctcatttatgggggcgaaggt
taccaaagccaacaagaaacactgcaaaaaggcgtagatatcgttatcggcactacgggc
cgtataatcgattattacaaacagcaggtattcagcctggcgaacattcaggtggcggta
ttagatgaagccgaccggatgtttgatctcggttttatcaaggacattcgctttttattc
cgtcgtatgccgcctgcggtaaatcgtttgagcatgttattttcagcgacactgtctttc
cgcgttcaggaattggcctacgagcatatggacaacccggtgcacgtgcaagtagagccg
gaacagcgcactgccagccgtatcgtggaagaactgttttatccttccgacagcgacaag
atgaagctgttgctgactctgttggaagaagactggcctgagaaagccattgtattcgcg
aatactaaacacacctgtgagctggtaaccgattggttgaatgccgacaaacaccgagca
ggtctgttaagtggcgacgtgccacagaaaaagcgtttgaatattctggaagattttgac
aaaggtcatctggatattctggtagccacggacgtagcagcccgtggactgcatatagac
aaagtatctcacgtatataactacgacttacccgatgacgccgaagactatgtacaccgc
attggccgaaccggacgagccgggaaaagtggccacgccattagtttcgcttgtgagaaa
tacgcactgaatttgcccgctatcgagacctatattggccatacgattccggtaactgat
tatttccacgatgttttgcttgatgatgttacccctcccagaaggactcagcgcaaacga
gtacatcgcgataaacgcaacaatcaaaagcgccataacaacaggtag
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