Pecten maximus (king scallop): 117316312
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Entry
117316312 CDS
T07399
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax04512
ECM-receptor interaction
pmax04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117316312
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117316312
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmax00536
]
117316312
Glycosaminoglycan binding proteins [BR:
pmax00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117316312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
TILa
FnI_RECK
VWC
Motif
Other DBs
NCBI-GeneID:
117316312
NCBI-ProteinID:
XP_033726745
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All DBs
Position
2:complement(8507333..8537353)
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AA seq
1407 aa
AA seq
DB search
MTSYANVRWGFLLICMIGKISAQQGINYARNGLPPPPTPAPGADCFLGGKRIPHQMPFVQ
CLTLDSCICVNGELLCNKIECPAQTECPLGQELVVSPESTIPCCPECQEVIGKKEMSKMQ
LEHQELGKLAVRSDEKAGPAMAGIPMTQGVPGPRGPQGSMGPAGPQGFMGMRGEPGETGP
PGQPGQRGFPGPSGPPGADGDEGLPGEQGPSGPIGSPGNPGRPGMPGLPGPKGHRGFPGS
TGKEGPIGAQGPKGPSGLSGPPGAPGPMGPTGATGERGRDGSPGPMGLRGMDGNPGETGS
QGPTGNPGPPGFSGSPGAKGDSGQAGQRGPMGLSGPPGENGISGPPGTPGEAGQPGRDGA
SGSKGEQGLQGAPGSPGFPGPQGPPGESGESGAMGMKGEPGNNGADGREGSPGRQGLPGA
QGERGLPGLAGNPGTRGPQGLPGPMGASGISGDRGPQGLQGMPGAMGPPGQQGNDGERGA
TGESGEPGENGQQGAAGLPGSPGPRGQPGISGNNGRQGPTGVAGIPGETGKAGEQGPTGP
AGVPGLPGQSGPKGDDGTAGRPGDTGPAGRPGPRGERGPSGEGGPQGPPGSVGPQGERGE
TGQIGEPGFQGITGQAGAPGESGRPGESGIMGEPGVPGEAGGRGDRGFPGEPGPVGPTGA
PGERGGEGPSGEVGQSGPPGPPGTRGDSGSPGLVGLPGEAGPPGLRGSQGFTGEPGESGA
PGLQGVPGEQGAPGTPGLVGPASFTSPEKGDRGPPGEAGASGEPGEGGSRGYAGPPGALG
PMGPPGPAGESGPEGDEGKSGPRGDPGPRGYPGEPGAAGAPGQDGLNGSPGSAGETGAMG
LSGSPGAPGRPGPGGLPGEKGNTGMAGPAGRAGEQGDHGEIGPPGPPGSTGAAGFPGTDG
APGDRGSDGQIGAQGPVGAVGPQGERGGPGFPGMPGEIGPVGEAGPQGPTGNPGKDGLDG
IPGPPGSPGPMGGAGYPGLPGETGSPGMDGNMGPPGLTGSKGDRGPMGTNGLQGPPGPQG
PMGSVGSPGDQGERGERGASGESGPVGAPGQPGEQGPAGPQGDKGDSGAPGLRGDKGWPG
LPGGQGLPGPQGNAGEMGHSGPPGPPGQPGVQGPRGQSGRDGEPGPQGLPGQQGPRGPAG
NDGDSGPQGPQGPRGSPGPPAYGQMCSGGAAAPVKAGSYMYDEALRELPSTFLSGLQDSI
SRLYVPDGTKKAPARDCAHLYDAQTTDEAKAQLKNGYYMIDPDGMEINNAIRAYCRFARR
ETCLKPGQDELTWDSVESFIGSTKEFYYKATKKQIRNLQDASDSSRQTLVYKCRNHDISL
STTSFETFLGCNVMANKRDGVKPRYVDVRVLEDNCNMSNEWGQKVFTLESRKAEALPILD
VDINESDISGNQAEFKIVIGEVCFRKD
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgtacgctaacgtacggtggggctttctgctcatatgtatgattggaaaaata
tcagcacaacaagggattaactacgctcgaaatggattaccaccaccaccgacaccagca
cctggagcggactgttttcttggcggcaaacgtatccctcaccaaatgccgtttgttcag
tgcctaacacttgactcttgcatctgtgttaatggagaattgctctgtaataagatcgag
tgtcctgctcaaactgaatgcccgctcggacaggaactggtcgtgtcgcctgaatcaacg
ataccatgttgtcctgagtgccaagaggttattggcaaaaaggagatgagcaaaatgcaa
cttgaacatcaagaacttgggaaacttgctgttcgttctgatgagaaagcaggcccagct
atggcgggtattccaatgacacagggagttccaggaccacgcggaccacagggatcaatg
ggcccagctggaccacaaggatttatggggatgaggggagaaccaggagagactggacca
ccaggacaaccaggacagcgaggattcccaggcccatccggtccaccaggagctgatggt
gatgaaggattgccaggcgaacaaggaccatctggaccgatcggctctccaggaaaccca
ggacgtccgggtatgcctggcttgccaggacctaagggccacaggggatttcccggaagc
actggaaaagaaggaccaataggagcacagggaccaaagggaccctctgggctttctggt
ccacctggggcaccaggaccaatgggacctactggagcaacgggagaacgtggaagggac
ggatcgccaggaccaatgggactccggggtatggatggaaatccaggagagactggatcc
cagggaccaacaggaaatccaggacccccaggtttctctggcagcccaggagcaaagggt
gattctggacaagctggtcagcgtggacctatgggtctctcaggaccaccgggtgagaat
ggaatctctggaccacccggtacaccaggagaggctggtcaaccaggacgtgatggcgct
agtggttctaagggagaacagggtctgcaaggtgctccaggttctccaggattcccagga
ccccaaggaccaccgggagagtctggcgagtcaggagcaatgggaatgaagggtgaaccg
ggaaacaatggtgccgacggtcgggaaggaagcccgggacgacaaggtctgcctggcgct
cagggagaacgtggcctgccgggattggctggaaatccaggaacacgtggaccacaagga
ttacctggaccgatgggagcatcaggaatatctggagacagggggcctcaaggtctgcag
ggaatgccaggagcaatgggacctccaggtcaacaaggcaatgacggcgagaggggagca
actggagagtctggtgaacccggagagaacggacagcaaggagcggcaggattaccaggg
tcaccaggaccacgaggacaaccaggaattagtggaaacaatggacgacaaggaccaact
ggagtagctggaatcccaggggaaactggaaaggctggagagcaaggacctaccggacca
gcaggcgtacccggtctgccagggcaatctggaccaaaaggagatgacggtaccgctgga
aggcctggagacacgggaccagctgggcgacccggaccacgtggtgagaggggaccttca
ggagagggtggacctcagggaccaccagggagcgtaggaccacaaggtgagcgtggggag
actggacagattggagaaccaggattccagggaataactggacaagccggtgctccggga
gagtctggaagacctggagaatcaggaatcatgggagagccaggagttcccggagaggct
ggaggaagaggtgaccgaggattccccggagagcccggacccgttggaccgactggtgca
cctggagaaaggggaggcgaaggaccttctggagaagtcggacaatccggacccccggga
ccaccaggaacacgcggtgatagtggatcacccggactcgtaggtcttccaggagaggcc
ggaccaccaggattacgaggaagtcaaggtttcactggagagccaggcgaatctggagcc
ccaggtctgcagggtgtgccaggagaacagggagcaccaggaacaccgggacttgtcgga
cctgccagttttacttcaccagagaagggagaccgtgggccacctggagaggccggagca
tcaggagaacctggagagggaggatcaagaggttacgctggaccaccaggtgcattagga
ccaatgggaccaccgggaccagccggcgaaagcggacctgagggagacgaaggcaaatct
ggaccaaggggtgacccaggaccaagaggatacccaggggaacctggagctgccggcgct
cctggccaagatggacttaacggttcaccaggttctgctggagagactggtgctatggga
ctttcaggttccccaggtgccccaggcaggccaggaccaggaggtttaccaggcgagaag
ggaaataccggaatggctggaccagccggtagggcaggagagcagggagatcatggagaa
attggaccaccaggacctcctggatcaactggtgctgcgggattcccgggaactgatggt
gcccctggtgacaggggaagcgatggacagattggagcacaaggccctgtcggcgccgtt
ggaccccagggagagagaggtggaccaggattccctggaatgccgggagagattggacct
gttggagaagcgggaccacaaggtccgacaggaaaccccggaaaagatggactggacggt
atccctggacctccaggatcaccaggacccatgggaggcgccggataccctggactgcct
ggagagactggatcacctggcatggatggcaacatgggacccccaggcctgacaggatca
aagggagacagaggaccgatgggcacgaacggactccagggaccccctggaccacaggga
cctatgggatcggtcggttcacctggagatcaaggtgaacgaggagagaggggagcatca
ggagagagcggcccagtcggagcaccaggacaacctggagaacagggacctgcgggacca
caaggtgacaagggcgactctggagccccaggattaagaggagataagggatggccaggt
ttgcctggtgggcaaggattaccaggaccacaaggaaatgctggtgagatgggacattct
ggacccccaggacccccgggacaacccggagtacaaggaccacgaggacagagtggccgt
gatggcgagccaggaccccagggattaccaggacaacagggaccccgaggaccagccgga
aatgatggtgacagtggaccacaaggaccacaaggaccaaggggatctccaggaccacca
gcatatggtcaaatgtgttccggaggagcagcagcgccagtgaaggcaggaagctacatg
tatgatgaagctcttagggaacttccatccacattcctgagtggcttacaagattccatc
tcccgtctttacgttcctgacggaacaaagaaagcaccggctagggattgcgcccacctg
tacgacgcccagacgactgatgaggctaaagcacaactcaaaaacggatattatatgatt
gatcctgacggcatggagattaacaacgctatcagggcatactgtaggtttgctaggaga
gaaacttgcttaaaaccaggacaagatgagttaacatgggactccgttgaatcatttatt
ggaagcacaaaagaattctattacaaagccacaaagaaacaaatcaggaatttacaagac
gccagcgacagctcaagacaaactttagtatataaatgtagaaatcacgacatcagcctc
agcacaacctcattcgagaccttcctcggctgcaatgtcatggccaacaagcgtgacggt
gtgaagcctcgttatgttgacgtcagggtacttgaggataactgcaatatgtccaacgaa
tggggacagaaggtattcaccttggaatccaggaaggctgaggctctgcctatattagat
gtagacataaacgaaagtgatattagcggtaaccaagcagagtttaaaatagtaataggc
gaggtctgcttcagaaaagactaa
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