Pecten maximus (king scallop): 117320356
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Entry
117320356 CDS
T07399
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117320356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pmax03041
]
117320356
Spliceosome [BR:
pmax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117320356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_Vps41
Ge1_WD40
WD_LRWD1
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
MIOS_WD40
WD40_like
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
117320356
NCBI-ProteinID:
XP_033730856
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All DBs
Position
2:18324087..18349509
Genome browser
AA seq
515 aa
AA seq
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MSDDEEEPGLHFRPTKPVVYGSLEDKERQRLANIKTSGSLASDAIEAGKAAGNIVINDGS
RYEISDHVDQSELLAELERRKKARHIHVSTDDAEVKASLRQLGEPICLFGEGPADRRERL
KKLLSQIGEDALKQKKQEEIELKKKKAEENITWYHEGSDSLKEARFWIAEYSIPRAKNRL
AAQRQTKFIPTTQKNAKTQDIQKRIGAISNECSQIGDNRPLSFCNFSPNGKILAVSSWSG
LCKLWSIPDCGLIRQLRGHSGNVGAIVFHPHATVSLDEKACCMASCGQDGSVKLWNLVSE
EPMADIEGHAPYRVSRLAYHPSGRFLGTCCFDNSWRLWDLEAQDEILHQEGHSKAVYDIA
FQNDGALSVTGGMDGFGRVWDLRTGRCVMFMEGHQKSVLGVDFSPDGYHIATGSEDNTAK
IWDLRQHKCIYTIPAHTNLISKVKFQPDHSNYLVTSSYDCTSKIWAHPTWAPLKTLAGHE
GKVMAIDISPDRKYIASVSYDRTFKLWATDSQGGL
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatgaagaagaacctggtcttcactttcgaccaaccaaaccagttgtatat
ggaagcttggaggacaaagaaaggcagcgattggctaatatcaaaacttcaggatcttta
gccagtgatgcaattgaagctggaaaagcagcagggaacattgtcataaatgatggatcc
agatatgagattagtgatcatgtagaccagtctgaactgttggcagagttagaaaggagg
aaaaaggcacgtcacatccacgtatccacagatgatgctgaagtgaaggccagtctacgg
cagctgggagagcccatatgcttgtttggggagggccccgctgacaggagggagagactt
aagaagttattatcacagataggagaagatgctctcaaacagaagaagcaggaagaaatt
gaactcaagaagaaaaaggctgaggagaatattacttggtaccacgaaggttctgacagt
ttgaaggaggctcgattctggatagctgagtattccataccaagggccaagaatagattg
gcagctcagagacagacaaaattcattcctaccacacagaaaaatgccaagacacaggac
atacagaaacgtattggggccatatccaatgaatgcagtcagattggagacaatcgtcct
ctgtcattctgcaacttcagtccaaatggaaaaatattggcggtgtcatcatggtctgga
ctttgtaagctgtggtccatacctgactgcggtttgattagacaactcagaggacatagt
ggcaatgtaggagcaatagtgttccaccctcacgccactgtctcgcttgatgaaaaagcc
tgctgtatggcttcgtgtggtcaagatggatcggtcaagctctggaatcttgtcagtgag
gagcctatggcagacattgaaggccatgctccatacagagtgtcccgtctggcctatcat
ccctctggacgcttccttggaacttgctgttttgacaattcttggagactttgggactta
gaggctcaggatgagattctacaccaagagggacacagtaaagctgtgtatgacatagcc
ttccagaatgatggtgctctgtctgtcactgggggtatggacgggtttggacgagtctgg
gatctacgcactggacgttgtgtcatgttcatggaaggtcatcagaaaagtgtacttggt
gtggacttctctccagatgggtatcacattgcaactggcagtgaagataatacagcaaaa
atatgggatctccggcaacacaagtgtatctataccatccctgcccatacaaaccttatc
tccaaggtcaagttccaaccggaccattccaattacctggtaacatcttcatatgactgt
acatcaaagatctgggcccaccctacctgggctccactaaaaaccctggcaggtcatgag
ggtaaggtaatggcaatcgacatctcacctgaccgcaagtacatagcctctgtgtcatat
gatagaacgttcaaattgtgggccacggatagccagggaggcctctag
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