Pecten maximus (king scallop): 117320675
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Entry
117320675 CDS
T07399
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03013
Nucleocytoplasmic transport
pmax03015
mRNA surveillance pathway
pmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117320675
09122 Translation
03013 Nucleocytoplasmic transport
117320675
03015 mRNA surveillance pathway
117320675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117320675
03041 Spliceosome [BR:
pmax03041
]
117320675
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117320675
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117320675
Spliceosome [BR:
pmax03041
]
Complex C
Other components
EJC/TREX
117320675
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117320675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
ZNHIT3_C
Motif
Other DBs
NCBI-GeneID:
117320675
NCBI-ProteinID:
XP_033731082
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MDPMDDIDTELNYIEEPEDETTPSKKAGHVSGGNMKGEYVSIHSSGFRDFLLKPELLRSI
ADCGFEHPSQVQHECIPQAVLSMDVLCQAKSGMGKTAVFVLATLQQLDPVDGQVSVIVLT
HTRELAFQIADDYRKLSRHMNSVKVAVFFGGIPIKQDEETLSKNCPHIVIGTPGRILALA
RKGTLKLGNIRHFILDECDKMLEILDMRKDVQDIFRMTPHEKQVMMFSATLGKESRLVCR
RFMQDPLEVFVDNCSKLTLHGLRQFYVQVTEKEKNKKLVTLLDALEFNQVIIFVKSVQRC
VALAKLLLDQNFPAITIHSAMKQEERLSRYKQFKEFEKRLLVSTNLFGRGMDVIGVNIVF
NYDMAEDSDTFLHRVARAGRFGTKGMAITFIANEMEATIMNKVQERFQVNVPVLPDEIDT
SSYLPGK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggatcccatggatgatatcgacacagaacttaattatattgaagagcctgaggatgaa
accacgccctctaagaaagctggccatgtctccgggggcaacatgaaaggggaatatgtt
tctatacatagctcgggattcagggacttccttctcaagccggaacttctgcggtccatc
gccgactgtggatttgaacatccatcacaagttcaacacgagtgcatcccgcaagcagtg
ttgtcgatggacgtgttgtgtcaagccaagtctggtatggggaagactgctgtgtttgtt
ctggccacacttcaacagttggaccctgtggacggacaggtttctgttatagttttgaca
cacacccgggaacttgccttccaaattgcagacgactaccggaagctatctcgtcatatg
aacagtgtcaaggtcgctgtgtttttcggaggaatccctatcaaacaagacgaagagacg
ttatcaaaaaactgtccccacattgtcataggaactcccggccgcatcttagcactggct
cggaaagggacactcaaactgggaaacatccgccattttatcctggacgagtgtgacaag
atgcttgaaatactagacatgaggaaagatgttcaagatatattcagaatgacgccacac
gagaaacaagtcatgatgttcagcgccacccttgggaaggaatctcgtcttgtctgcagg
aggtttatgcaggatccattggaggtctttgttgataactgctctaagttgaccctgcat
ggccttcgacagttttatgtccaggtcacagagaaggagaagaacaaaaaactcgtgaca
cttctcgatgccctggaattcaaccaggtgatcatatttgtgaagtccgtccagaggtgt
gtggctctagccaagttgctgttggaccagaacttcccagccattaccatccacagtgcc
atgaagcaagaggaaaggctatctcgatacaagcaatttaaggaattcgagaagcgcctc
ttggtgtccacgaatctttttggccgagggatggatgttatcggagtcaacattgtcttt
aactacgacatggcagaggactcggacacctttctccatagggttgctagagctgggaga
ttcggcacgaagggcatggccatcaccttcatcgccaacgagatggaggccacaataatg
aataaggtacaggaacgattccaggtcaatgttcctgttttacctgatgaaatcgacaca
tcctcttacctcccagggaaatga
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