Pecten maximus (king scallop): 117321612
Help
Entry
117321612 CDS
T07399
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03013
Nucleocytoplasmic transport
pmax03015
mRNA surveillance pathway
pmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117321612
09122 Translation
03013 Nucleocytoplasmic transport
117321612
03015 mRNA surveillance pathway
117321612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117321612
03041 Spliceosome [BR:
pmax03041
]
117321612
Enzymes [BR:
pmax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117321612
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117321612
Spliceosome [BR:
pmax03041
]
Complex C
Other components
EJC/TREX
117321612
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117321612
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
117321612
NCBI-ProteinID:
XP_033731984
LinkDB
All DBs
Position
2:complement(25324553..25335744)
Genome browser
AA seq
428 aa
AA seq
DB search
MADNENEAELLDYEEEENEATADGAGDVQQQIKKDVKGTYVSIHSSGFRDFLLKPELLRA
IVDCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVL
AHTRELAFQISKEYERFSKYMNSTKIAVFFGGMSIKKDEEVLKKNCPHIVVGTPGRILAL
VRSKQLVLKHAKHFILDECDKMLEELDMRRDVQEIFRATPHEKQVMMFSATLSKDVRLIC
KKFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQR
CMALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV
FNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQERFEVNITELPDEID
ISSYIEGR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaacgagaatgaagctgaacttttggactatgaagaagaagagaatgaagct
accgctgatggagccggagatgtccagcaacaaataaagaaagatgtgaaaggaacatac
gtgtccatccacagctctgggttcagagactttcttctgaaacccgagttgctccgagcc
attgttgattgcggttttgaacatccttcagaagttcagcacgaatgcatcccacaagca
attttgtctatggatgtgctgtgtcaagcaaaatctggtatgggaaagacagctgtgttt
gtattggcaactcttcaacaactggaacctgttgatggccaggtgtcggtgcttgttttg
gcacataccagggaactagctttccagataagcaaggaatatgaacggttcagcaaatac
atgaacagcacaaagatagcagtcttctttggcggaatgtccatcaagaaggatgaagag
gtcctcaaaaagaactgcccacatattgtggtgggaaccccaggaaggatcctggccctt
gtaagatcaaaacaacttgtcctgaagcatgccaagcatttcatattggatgaatgtgac
aaaatgttagaagaacttgacatgagaagagatgttcaggagatattcagggcgactccc
catgagaagcaggtcatgatgtttagtgccaccctcagcaaagatgtccgactaatctgc
aagaagtttatgcaagatcctatggaagtgtatgtggatgatgactccaagctcaccctt
catggtctacagcagcactatgttaaactgaaggacaatgagaagaacagaaagcttttt
gagcttcttgatgttctcgaattcaaccaggtgataatctttgtcaagtctgtccagaga
tgtatggccctagcacagttgttggtggaacagaacttcccagctattgctatccataga
gctatgacacaggaggaaagattatctcgttatcaacagtttaaggatttccagaaaaga
attctggtagccacaaatttgtttggacgtggaatggatattgagagagtaaacattgtg
tttaactatgacatgcctgagaactctgacacatatttacacagggtggctcgagctgga
agatttggtaccaaaggtctcgccatcacatttgtctctgatgagaatgatgccaaggtg
ttgaatgatgttcaggaacgatttgaggtcaacatcacagaactaccagatgagattgac
atctcctcgtatattgagggtcgatga
DBGET
integrated database retrieval system
