Pecten maximus (king scallop): 117321718
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Entry
117321718 CDS
T07399
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117321718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117321718
03041 Spliceosome [BR:
pmax03041
]
117321718
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117321718
Spliceosome [BR:
pmax03041
]
Complex B
Other components
Prp19-related factors
117321718
Complex C
117321718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
NRDE-2
PPR
ARM_TT21
BDHCT_assoc
Motif
Other DBs
NCBI-GeneID:
117321718
NCBI-ProteinID:
XP_033732120
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All DBs
Position
2:28338734..28357660
Genome browser
AA seq
849 aa
AA seq
DB search
MIMPEKKESQKDIFFEDEDLPYEEDILRNPYSVKCWLRYIEHKKGAPKNAINLVYERALK
ELPGSYKLWYNYLKIRRRQCKGHCITEPLYEDANNAHERALVFMNKMPRIWLDYCQFLVD
QCKVTKTRRTFDRALRALPISQHHRVWPVYLKFVCKYNLQETTVRVYRRHLKLQKENTED
YIEYLKSIEWLDEAAARLVNIINDDPFVSKEGKSKHQLWNELCELVAKNPDKVTSLKIEP
IIRQGLKRYTDQIGVLWNSMADYYIRGGHFERARDIYEEAIQTVITVRDFTQVFDAYAQF
EKNVIGAEMETMEEKGASEEDDLNLELRLARLECLMDRRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGKPREIINTYTEAVQTVDPKQASGKPGTLWVEFAKFYEAAGQIEDARVIFDKAV
KVPYKHVDDLATVTCEWGEMEIRHENYEEALKLMQKTTVPPSRKVAYHDETETVQDRVHK
SLKVWSMYADLEESFGTFKTCKAVYDRIIDLRIATPQIIMNYGLFLEENNYFEEAFKAYE
KGIALFKWPNVYDIWNTYLSKFIERYGGSKLERARDLFEQCLENCPPKFAKAIFLLYAKL
EEEHGLARHAMAVYDRATKGVLPEEQAEMFNVYIKRAAEIYGVTYTRPIYEKAIEVLPDD
HSREMCMRFADLERKLGEIDRARALYSHCTQMCDPRVAPHFWQVWKDFEIKHGNEDTVRE
MLRIKRSIQAMYNTQVNFMSSQIMAAQSGGKTDTETSNPEVDSMKKLEERARQLAEEAMK
DQAKPDKGILFVRSNTTDEELGEMTKTANPDAIDIDDFSSDDDENIEELEVQKQSVPSEV
FGSLATEEG
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgataatgccagaaaagaaagaatcacaaaaggatattttcttcgaggatgaagatctt
ccttacgaagaagacatcttgcggaatccttattcggtaaagtgctggttgcgatatatt
gaacacaagaagggagccccaaaaaatgctattaatttagtatatgagagagcattaaaa
gaacttccaggaagttataagctttggtataactacctaaagatccggcgacgccagtgt
aagggtcattgtatcactgaaccactctatgaggatgccaacaatgctcatgaacgtgcc
cttgtgttcatgaataagatgccacggatttggctggattattgccagttccttgtagac
cagtgtaaagtgactaagactcgtcgaacatttgaccgagccttaagggctcttcccatt
tcacagcatcacagagtgtggcctgtctacctcaagtttgtgtgtaaatacaatctacag
gagaccactgtacgtgtgtacagacgtcacttaaagcttcagaaagagaacacagaagac
tacatagaatacctaaaatctatagagtggttggacgaggcagcagcacgcctagtcaat
ataatcaacgatgatccgtttgtgtccaaagagggcaagtcgaaacatcagttatggaat
gaactgtgtgagttggttgcaaaaaacccagacaaggtgacatcactgaagattgagcct
atcatccggcagggtctgaagcgttacactgaccagataggtgttctctggaactccatg
gctgactactacatcagaggcggacactttgaacgggctagagatatctatgaggaggcc
attcagactgtaataacagttcgagacttcacacaggtctttgatgcttatgctcaattt
gaaaaaaatgtcattggtgcagaaatggaaactatggaggagaaaggagcctctgaggaa
gatgacctcaatcttgagttacgtttggctcgattagaatgtctcatggacagaagacct
ctgcttctaaatagtgtcctactacgacaaaacccacacaatgtacatgaatggcataaa
agggtgaaactctatgaaggcaagccaagggagataatcaacacatatacagaagctgtc
cagacagtcgatccaaaacaggcatcaggaaagccaggcacgctgtgggtagaattcgcc
aagttctacgaggcagcgggacaaatagaggatgctcgtgtgatatttgacaaggctgtg
aaggtgccttacaaacatgtagatgatctggcaacagtcacctgtgaatggggagagatg
gaaatccgacatgaaaactatgaggaggccttgaaattaatgcagaaaaccacagtacct
ccgtctcggaaagtggcatatcatgatgagaccgagactgtacaggacagggtacacaaa
tctctgaaagtctggtccatgtatgctgacctggaggaaagttttggaacatttaagacc
tgtaaagcagtttatgatagaatcatcgacctgcggatagccacaccacagatcatcatg
aactatggcctgtttttagaggaaaacaactactttgaggaagctttcaaggcctatgaa
aaggggattgcattgtttaagtggcccaatgtctacgacatctggaatacatatttgtcc
aagtttattgagagatatggtggatcaaagcttgagagagcaagggacttgtttgagcag
tgtcttgaaaattgtccaccaaaatttgcaaaagccatattccttctgtatgccaagttg
gaggaggagcatggattggctcggcatgccatggcagtgtatgatcgggcaactaaaggg
gtgttacctgaagagcaggcagagatgtttaatgtatacataaagagagcagcagagatc
tatggtgttacttacacccgacctatctatgaaaaagccatagaagttcttccagacgac
cattcaagagagatgtgcatgaggtttgcagatcttgagagaaaacttggggaaattgac
agagcaagggcactgtactcccattgtacacagatgtgtgatcctcgggtagcaccccac
ttctggcaggtgtggaaggactttgagattaaacatggaaatgaggacaccgtacgggaa
atgttgaggatcaaacgcagcatacaggccatgtacaacacacaggttaacttcatgtcc
tcacaaataatggcagcacaaagtggagggaagacagatactgaaacttccaatccagaa
gtagacagcatgaagaagttggaggaacgtgcccgacaattagcagaggaggcaatgaaa
gaccaagctaaaccagacaagggcatcttatttgtgaggagtaacactacggatgaggag
cttggagagatgacaaagacagccaaccctgatgccattgatattgatgacttttctagt
gatgatgacgaaaatattgaagaattggaggttcagaagcagtctgttccatcagaggta
tttggatctctggccacagaagagggctga
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