Pecten maximus (king scallop): 117322046
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Entry
117322046 CDS
T07399
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117322046
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmax00536
]
117322046
Glycosaminoglycan binding proteins [BR:
pmax00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117322046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
117322046
NCBI-ProteinID:
XP_033732661
LinkDB
All DBs
Position
2:complement(39452633..39524794)
Genome browser
AA seq
1689 aa
AA seq
DB search
MRKPLQSFSRTNINMELVLVSILLFFAVPSSAQRDAVFVLSDIVTIDDNFQNVRTVQGFC
DKRGKLQNETDTATEFTPSTSLTANVNTIFSPGGLFVDDFSIILIFKKNPGVDTTLFSIY
SNELNELMSLMVGRTTRFLFNGDHPIQRQEVAYDLGVDSSSGWTRLALGIKKDVLTVYHN
CQELEPINLKNRPLSLPQDAVIFLGSNLDDETLFEGLFQQMLFVRGASAAEALCTKFAPN
CGEQITTETEVVGRPKSDSSIMYPDGMVIDKSGAAIQLPVIPEGELEYLPIEKSGMGPDL
LTDQEGHVLLEYDKSTGVSYAYRYGPPGPPGPRGPSGPSGPPGERGFSGRDGVPGASGIQ
GAPGHVFILPLPTEGKTSNQAAAFRTMLEQHMMAMSGARGPLGMTGLPGAVGPPGVDGSK
GDSGNPGEQGLTGPRGLTGPRGKSGKKGREGAEGERGNMGPPGDKGEVGFPGIMGMPGSK
GERGANGAPGQSGPIGPEGKQGDPGEFGPIGAPGEMGPRGFLGPRGRTGSMGPPGIPGTE
GPTGPKGNQGGNGAPGAPGQSGAPGQTGPPGPPGAIGPRGIPGPQGKPGLPGMPGPIGTP
GVPGRPGDPGTKGDTGPQGMQGIVGYPGTRGLKGDIGPSGALGEKGDKGFHGMQGIKGSG
GPKGDRGYDGVAGPMGIEGIPGPKGNAGAVGNSGPQGPTGEKGQMGMPGMPGFTGPQGPK
GDPGRPGRRGRRGARGKMGLNGQSGDRGERGMRGPPGERGKEGPIGPIGVKGESGPPGPP
GFQGEQGLQGAPGGVGLMGPMGPPGLPGKDGLSGLPGERGETGLPGIPGQPGQMGVMGPP
GHSGEAGAQGDPGPPGNPGVPGDVGLPGASGERGIPGLPGPSGNDGVMGPPGPMGFDGER
GFPGPPGKDGNRGEPGMDGQQGPMGMKGDVGEPGNSGPQGLSGPPGPSGPEGLRGQKGDT
GLEGPGGLQGNMGQQGPRGYDGPPGPAGSPGEDGDKGDNGPPGPKGSKGEHGEMGPPGPS
GPLGSQGPNGPPGPPGEPGIQGIQGVAGSKGSEGPRGLPGATGPVGLQGLPGTIGVKGES
GDRGAVGGPGAPGPQGPPGPPGSTGLPGNTGPTGPEGRQGQKGEMGTTGEPGTPGQDGTV
GPPGPQGPKGLDGRSGLQGPPGPRGPAGLIGPKGHNGMSGEEGLPGPTGEPGLKGEPGKD
GPEGQRGSPGPVGLPGVQGEAGLPGRAGKTGEQGNPGAQGVQGEMGKKGDRGLFGTAGPR
GPAGPTGSPGPSGVQGPRGSPGPVGEAGSMGPPGMPGEMGLLGPPGPPGPKGEQGDRGIK
GHPGRVGPPGVVGDPGPKGEPGPVGPPGLKGDRGERGYPGDAGFQGPDGAPGLPGQIGPS
GPKGEPGFPGAKGESGHRGAPGPVGAPGEAQAFPSELLGTPLTKAGTGFRKRRAAQGFNE
KFTEMLADMSKNEYELKEGVTIVVEQMFSHVDQIKEEMERMIYPTGKEGNPASTCRDILL
GHPDTQDGWYYIDPNQGAPDDALRVFCNMTAGGESCFYPSDTTKTSDLKFWKKGKSKGNK
LFSELKDGYEFEYTIGHQQKMLALYSSTAHQKFTYFCQNAVAWFSEERNNYNSAVVFMGS
DNKRINTENLAPENVVDGCRNKPASGSTVFVVDTKTVEDLPIVDFTPKDYGDADQGFGYK
MGPVCFRHV
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaacctttacaaagtttttccaggactaatataaacatggaattagttctcgtt
tctatcctgctattttttgcagtgccatcatcagctcaaagggatgcagtttttgtattg
tctgatatagtgaccattgatgacaatttccaaaatgtaagaactgttcaaggattttgt
gacaaaagaggaaaacttcaaaatgaaaccgatacggctacagagtttactccaagtaca
tcacttactgccaatgtcaatacgatatttagtccgggtggactttttgtggatgacttt
tccatcattcttatctttaaaaaaaatccgggcgttgacacgacactgttttcaatttac
tccaatgaattaaatgaattgatgagtttaatggttggacgaacaacaagatttctattc
aatggcgaccaccctattcagcgacaagaagttgcttatgatttgggtgttgactcaagt
tcaggctggacaaggttagcactgggtatcaagaaggatgtattgacggtgtatcacaac
tgtcaagaattagaaccaatcaatctaaaaaacagacctctatcacttccacaagatgcc
gttattttcttgggatctaatctggatgatgagacattatttgagggtttattccaacaa
atgctttttgtccgtggtgcctcggctgctgaagctctgtgcacaaagtttgcccctaac
tgtggtgagcaaatcaccactgaaaccgaagttgtcggtcgccccaagtccgactccagc
atcatgtacccagatggtatggtcattgataagtctggggctgctatccaacttcctgtg
attccagagggagaattggaatacctgcctattgaaaagtctggaatgggacccgatctc
ctcacggaccaagaaggacatgtgcttttggagtatgataaatctactggagtatcctac
gcctacagatatggaccaccaggacctccaggcccccggggaccctctggaccttcagga
ccccctggagagcggggattttctggacgcgacggagttccaggagcttctggaatccag
ggagcacctggccatgtcttcatcctcccactcccaactgaaggcaaaacttccaaccag
gctgcagctttcaggaccatgttggaacaacatatgatggcaatgtcaggagcccgaggc
cccctcggtatgactggtcttcctggtgctgtgggcccaccgggagtggatggttccaag
ggagactctggaaacccaggagagcagggactgacaggaccaagaggtttaactggacca
aggggaaagtcagggaagaagggacgtgaaggtgctgagggagaacgtggcaacatggga
cctccaggagacaagggtgaagttggattccctggaattatgggtatgccaggaagtaag
ggagagaggggagcaaatggagcaccaggtcagtctggaccaataggaccagagggcaaa
cagggtgaccccggagagtttggacctatcggagcaccaggagagatgggaccacgtggc
ttcttgggacctcgtggaagaacaggaagcatgggaccacctggaatcccaggaactgag
ggacctacaggaccaaaaggaaaccagggaggaaatggagcccctggagcccccggccag
tctggagcaccaggacaaactggacctccaggccctcctggagctatcggccctcgggga
attcctggcccacagggcaagccaggtcttccgggaatgcctggacccattggaacccca
ggtgttccaggacgcccaggagacccaggaactaagggcgacactggtccacaaggtatg
caaggtattgttggttacccaggaacaagaggactgaagggtgatataggaccatctgga
gctttgggagaaaagggagataagggatttcatggtatgcaaggaattaaaggaagcgga
ggtccaaaaggagatcgtggatatgatggagtcgcaggaccaatgggtattgagggcatc
ccaggacctaaaggtaatgctggagcagtgggaaattctggccctcagggcccaacagga
gaaaagggccagatgggtatgcccggtatgccaggattcactggaccacagggtcctaag
ggtgatcctggcagaccaggacgtcgtggacgacgtggagctaggggcaagatgggtttg
aatggacaaagtggtgaccgtggagagaggggaatgagaggcccccctggtgagagagga
aaggagggtccgattgggccaattggtgtcaagggagagagtggcccacctgggccacca
ggtttccagggagagcagggtctacagggagctccaggaggagttggacttatgggtccc
atgggacctccaggtctgccaggaaaagatggactctcagggttaccaggagagcgtgga
gaaactggactgccaggaattccaggccaaccaggacagatgggagtcatgggaccaccg
ggccactcaggagaggctggagctcagggagacccgggaccaccaggaaatcctggagta
cccggagacgttggactgccaggagcatctggtgaaaggggcattccaggtcttcccggc
ccatctggaaacgatggtgtgatgggaccaccaggccccatgggattcgacggtgagaga
ggattccctggacctcctggcaaggatggaaacagaggggaacctggaatggatggacag
cagggacctatgggtatgaagggagatgttggagagccaggaaactctggcccacagggt
ctctcgggacccccaggaccgtccggaccggaaggtttgagaggacaaaagggtgacact
ggtctagagggaccaggaggacttcagggcaacatgggacaacagggaccaaggggctat
gatggaccaccgggaccagcaggatctccaggagaagatggagataagggtgataatgga
cccccaggacctaagggatcaaagggagaacacggtgaaatgggacctcctggaccatct
ggacccctaggatcacagggaccaaatggaccacctggtcctccaggtgagccaggcatt
cagggaatccaaggagtagctggaagtaagggatccgagggaccacgcggcttgccaggg
gccaccgggcctgttggtttacagggactaccagggaccataggtgtaaagggagagtct
ggagatcgcggggcagttggaggacccggagcaccaggccctcagggacccccagggcca
ccaggatcaacaggtttaccaggaaacacaggaccaactggaccagagggcaggcaagga
caaaagggagagatgggaacgactggagagccaggcacacccggccaggacggcactgtg
ggaccaccaggacctcagggacctaagggattagatgggcgatcaggcctccagggacca
ccagggccaaggggccctgcaggactcattggccccaaaggacataatggtatgtcagga
gaggaaggactcccgggccctacaggagagccaggattgaagggtgagccaggaaaggat
ggaccagagggacagcggggatcaccaggaccagtgggtctgccaggagtacagggagag
gcaggtttaccaggaagggcaggaaagacgggagaacaaggaaaccctggtgctcaggga
gtgcagggagaaatgggcaaaaagggagatcggggtctgtttggtaccgctggcccccgc
ggccctgcaggaccaacaggttcaccaggaccatctggcgtacagggaccacgtggatcc
ccaggcccagtgggagaagctggatctatgggacccccaggaatgcccggtgagatggga
cttttgggaccacctggtccaccagggccaaagggagagcagggtgaccgcggcatcaag
ggtcacccaggaagagtgggacccccaggagtggttggagaccccggaccaaagggagaa
ccaggcccagtcggacccccaggactcaaaggagacagaggagagaggggctaccctggt
gatgctggattccagggaccagatggagctccaggacttccaggacaaattggaccatcc
ggaccaaaaggagaaccaggattcccaggagccaagggagagtctggacacaggggagcc
ccaggaccagtgggtgccccgggagaggcacaggctttcccatcagaacttctcggaact
ccattgacaaaagcaggtaccggatttaggaagaggagagcagcacaaggtttcaatgaa
aagtttactgaaatgttggccgatatgtccaagaatgaatacgaattaaaggaaggagtc
acgatcgtggtggaacagatgtttagtcacgttgatcagatcaaggaggagatggaacgt
atgatttatccaactggaaaagaaggaaacccagcctccacctgccgtgacatacttctg
ggacatccagacacccaagatggttggtattacattgaccctaaccagggagccccagac
gatgctctccgcgttttctgtaatatgactgccggaggagaatcatgcttctacccatca
gataccactaagacgtctgatcttaaattctggaagaaaggaaagtctaaaggaaacaag
ttattcagtgaattgaaggatggctatgagtttgagtacacaattggtcatcaacagaag
atgttggctctgtacagttcaacagctcatcagaaattcacatacttctgtcagaacgcc
gtggcctggttcagtgaggagagaaataactacaacagcgccgtcgtctttatgggtagt
gacaataaacgtataaacacagagaatctcgctccagagaatgtcgtcgatggctgccgt
aacaagcctgctagtggcagcacagtgtttgtcgttgacacaaagacggtagaggactta
ccaattgtagactttacccctaaggactacggggatgcagatcaaggctttggttacaag
atggggccagtatgcttccgacatgtataa
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integrated database retrieval system
