Pecten maximus (king scallop): 117322876
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Entry
117322876 CDS
T07399
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117322876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmax03021
]
117322876
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117322876
Transcription machinery [BR:
pmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117322876
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117322876
U7-dependent histone pre-mRNA processing factors
117322876
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
117322876
NCBI-ProteinID:
XP_033733700
LinkDB
All DBs
Position
3:316014..387623
Genome browser
AA seq
1346 aa
AA seq
DB search
MAGEHRRSTVAQFFEEEDDAALESTSTYDRVVDLINKASLMQKDAQKINNLKQVQELIIH
KEPNLLDNFLDEMLAFQSDRTVEVRKFVISFMEEACKKDRELLPKILPCLQLLLEDENVN
IQKKVILIMSQVYKCVLQWMCNAKGISDERTYVWEMVKGMKAKILEMADSENDGVRTHVV
KFLEGMVMILSTPSSDSEFPKNFKPVSDINLSIIPEDSDNKYLKVKRLEDEGKNIFETML
HFQASPHISSINLMTVMGSITSIAKQRPAFFGKVVQAFESLQVNLPPTLAKSQVSSVRKN
LKMHMLSLLRHRCSTDYMTQITTLLTDLGATNSEVMKAMPKIDESKKRKAEESTQVAKKA
KIEEVEIDDDDAGMTPFVDRTMTKPAPTVKQQSTAIDITSEDLESRLSTQNVADLVLISM
VMLPDTMPAHFQSTYTPIAAAGTEGQIKHIARLLATQLTTAGMGKGVAETQAQSEENEEA
GGESPAYQPSSPKQLIQTVVGGLTDDLPASVASSSKSMQPPPAPVRRGIKQFKLSSVTQE
LNRDDLDQMTISAVGRILNAEKSATQGNVLPARTKLLAGLTSQFGGELRDLLEEYIFEDL
RSRFDLAFAWLYQEYANCMGFCAPLMKLEKPSLASYDECLTRLLAGLLARVELKEGFFQR
VLIEAPAVTDNAILILKKYCLDENRVVAGMNTLKELILTRPVHRHRFLNVMLESCSHDKP
EVRNTAIRFTKKLYEKPQIATHIEEYASKMLKYLLLPKPPSEMFPRSKSGDLPQSWIEDI
IKMCLYLYLGLLPSNHKLIHELAVVYTSATADIKRTILRVLENPVKGMGMQSPELLLLVE
NCPKGAETLVTRVIHILTDKAAPSPELVERVRDLYHKRVPDVRFLIPVLTGLHKREVIQA
LPKLIKLNPVVVKEVFNRLLGGHGETSFTSPLTPAELLISLHNIDPNKCDMKTIIKATNL
CFSEKNVYTQEALAVVMKTLMEQTPLPTLFMRTVLQSLSMYPRLLGFVLNILQRLIIKQV
WKQKRVWEGFIKCCQRTKPQSFQVLLQLPSLQLKSVFESCPELREPLLNHIKSFTEHQIT
HIPKAIMAVLEKDPAEEQQKQAQKENMAAEARRLAEAKSMMAPPEVLVQVRQEPMEMQVI
RTVSSLSRDQQAAESAKHEAEREKAEKAKWEAEEREREALAKKAAQEKAEAEERERMAAE
QKAERQRLEEVRAAEAEAMVARALIDVEMADEDPDSPENALAIAEDEPMDTSQTSESAEQ
SQDTEEEEKAAEEIEEGEAVEEGEAVEEGEAVEEGEAAEEGEAEEEVKEVEVKSSKQKSG
RRGRTKGPSRSAAKSAPTRKSSRTKK
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaacatcgtagatcgacggtggcacagttcttcgaggaggaagatgatgcg
gcattggaaagcacctccacatacgacagggttgttgatctcatcaataaggcttcattg
atgcagaaggatgcccagaaaataaacaatctgaaacaggtgcaagagttgattattcac
aaggaacccaatttattggacaatttcctagatgaaatgttggccttccagagtgatcga
acagttgaagtgagaaaatttgtcatcagcttcatggaggaagcatgtaagaaggacaga
gagctgctgcctaagattcttccctgtctgcagctgctgctggaggatgagaatgttaac
atccagaaaaaagtcattcttatcatgtctcaagtttacaaatgtgtcctccagtggatg
tgtaatgctaaaggcataagtgatgagagaacttacgtctgggagatggtcaagggcatg
aaggcaaaaatactggagatggcagattcagaaaatgacggtgtgaggactcacgtggtg
aagttcttggaaggcatggtgatgatattgtccacgccttcatcagattccgagtttcca
aagaactttaaaccagtgtctgatatcaacctcagtataatcccagaggacagcgacaac
aaatatctcaaggtcaagcgtctggaggatgaaggaaaaaatatttttgagaccatgtta
cactttcaagcttctccacacatatctagcatcaacctgatgacagttatgggcagtata
acctccatagccaaacagagaccagcattctttggcaaagttgttcaggcatttgaatct
ctacaagtaaacctgcctccaactctagccaaatcacaggtgagcagtgtaagaaaaaac
ctgaagatgcacatgttgtcgttgctgagacatcgctgctctactgactacatgacacag
ataacaaccctcctcacagatctgggtgccacaaactcagaggtgatgaaggccatgcca
aaaatagatgaaagcaagaagaggaaagcagaggagtcaacacaagtagcgaagaaagct
aaaatagaggaggtggagatagatgacgatgatgctggtatgaccccatttgtggacaga
acaatgaccaagcctgctcccacggtcaaacagcagtctactgccattgacatcacatca
gaagacctagaatctagactctccactcagaatgtggcagatcttgttctcatcagtatg
gtgatgttgccagacacaatgccagcacatttccagtcaacatatactcctatagctgct
gccggtaccgagggacagatcaaacacatagctaggcttctggccactcaacttaccact
gcaggcatgggcaaaggagtggctgaaacacaggcacagtctgaagaaaatgaggaagct
ggtggtgaatcacctgcatatcagccatcttctccaaaacaattaatccaaactgttgtg
ggagggttaacagatgacttaccagcatcagttgctagttctagtaaatctatgcagcct
cctcctgcacctgtccgcagaggaatcaaacaattcaagttaagtagtgtgacccaggag
cttaatcgtgacgaccttgaccaaatgaccatcagtgctgttggcaggattctcaatgca
gaaaaaagtgctacacaaggcaatgtactaccagccaggaccaaactattagctgggctt
acatcacagtttggtggtgagcttagagaccttctagaagagtacatctttgaagacttg
cggtcgagatttgacctagcctttgcctggctttaccaggaatatgccaattgtatgggg
ttctgtgccccgctgatgaagttagaaaagccatcccttgcaagctatgatgaatgtctc
actcgtcttcttgctggtctcctggcgcgagtggaactcaaggaagggtttttccaacga
gtgttaatagaagcccctgctgtgacagacaatgcaattctgattttgaagaagtattgt
ttggatgagaaccgtgtggtggcaggtatgaatacactaaaggagctgatcctgactcgc
ccagttcacagacaccgcttcctcaatgtcatgctggagtcctgctctcatgacaaacca
gaggtgagaaacacggcaatccgcttcacgaagaagttatatgagaaaccacagatagcc
acacatatagaggaatatgcctctaaaatgttgaaatatctactactgcctaaacctcca
agtgagatgtttcctcggtctaaatcaggtgatctgccgcaatcctggattgaggatatc
attaagatgtgtctgtacctgtaccttggcctgttgccaagcaaccataagctaatccat
gaattagctgtggtttatacgtctgccactgctgacatcaagaggaccattctccgtgtg
cttgaaaacccagtgaagggtatgggaatgcagtcccctgaactccttttattggtggag
aattgtccgaagggggcggaaaccctagtgactcgtgtcatacacatcctcacagacaaa
gctgccccgtcaccagaacttgtggagagggtacgtgacctgtaccacaaacgtgtgcct
gatgtccgcttcctcattcctgtacttacaggactacacaagagagaagtaattcaggcc
ttacccaaactcatcaagctgaatccagtggtggtgaaggaggtattcaacagactcctg
ggaggccatggtgagaccagtttcacatccccactcacccctgctgagctgttgatctca
cttcacaacattgaccccaacaagtgtgacatgaagacgatcatcaaagctactaatctt
tgtttctcggagaagaacgtctacacacaggaagctctggctgtagtgatgaagacgctg
atggaacagacgccccttcctacattgttcatgaggacggttctacagtccctttctatg
tatcctcgtcttctcggctttgtactcaacatcctacagagactgatcataaaacaggtg
tggaaacagaagcgtgtgtgggaaggcttcattaagtgctgtcagagaaccaaaccgcaa
tcgttccaggttttactgcagctgccatcacttcagttaaagagtgtgtttgagagctgt
ccagagctacgggaacctttgcttaatcacatcaaatccttcacggaacaccagatcaca
catatacccaaggcaatcatggctgtcctggagaaggaccctgcagaggaacaacaaaaa
caagcccagaaggaaaacatggcagcagaggccaggagactggcagaggcaaaaagtatg
atggcccctccagaggttttggtacaggtcagacaagaaccaatggagatgcaggttata
aggacagttagttcactgtcacgtgaccaacaggccgcagagagcgccaaacacgaggct
gagagggaaaaagctgagaaagcaaaatgggaagcagaggagagggagcgggaggcactg
gctaaaaaggctgctcaggagaaagctgaggcagaggaaagggaaagaatggctgcagaa
cagaaggcagagaggcagcgcttggaggaagtgagagctgcagaagctgaggcaatggtc
gccagagccttaatagatgtagagatggctgatgaggacccagattcacctgaaaatgcc
ctggccatagctgaggatgaacccatggacacttctcagacatcggagtcagcagagcag
tcacaggatacagaggaagaggagaaagcagctgaggaaatagaggagggcgaggctgtg
gaggagggggaggctgtggaggaaggggaggctgtagaagagggggaggctgcagaagag
ggggaggcagaagaggaagtcaaggaggtggaggtcaagtcctctaaacaaaaatctggt
cgccgtggtagaactaaaggaccatcacggtcagcagctaagtcagcaccaactaggaaa
agttctaggacaaagaaatga
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