Pecten maximus (king scallop): 117323981
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Entry
117323981 CDS
T07399
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pmax
Pecten maximus (king scallop)
Pathway
pmax03008
Ribosome biogenesis in eukaryotes
pmax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmax00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117323981
09123 Folding, sorting and degradation
03018 RNA degradation
117323981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmax03021
]
117323981
03019 Messenger RNA biogenesis [BR:
pmax03019
]
117323981
03009 Ribosome biogenesis [BR:
pmax03009
]
117323981
03016 Transfer RNA biogenesis [BR:
pmax03016
]
117323981
Transcription machinery [BR:
pmax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117323981
Messenger RNA biogenesis [BR:
pmax03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
117323981
Ribosome biogenesis [BR:
pmax03009
]
Eukaryotic type
Pre-60S particles
RNases
117323981
Transfer RNA biogenesis [BR:
pmax03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
117323981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
117323981
NCBI-ProteinID:
XP_033735446
LinkDB
All DBs
Position
3:complement(34470122..34515361)
Genome browser
AA seq
955 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCIEQKAKEVDGQKVPVDTSQPNPNDYEFDNLYLDMNGIIH
PCCHPEDKPAPKNEDEMMVLIFEFIDRIFSIVRPRKVLYMAIDGVAPRAKMNQQRSRRFR
ASKETVEKKEEMAEMRAQLEAKGCSLPPPKPPGEHFDSNCITPGTPFMFKLAECLIYYIY
DRLNTDPGWQNIKIILSDANSPGEGEHKIMDYIRKQRAQPDHDPNTKHCLCGADADLIML
GLATHEPHFTIIREEFKPNQPRPCELCGQIGHEMKECAGLPKEKTEKGDEVKPFVGEEQQ
YIFVRLNILREYLERELVMENLSFPYDFERALDDWVLMCFFVGNDFLPHLPSLEIREGAI
DRLQRLYKDCVRKTGGYLTENGVLDLSRVQLVLSELGEVEDEIFKSRRSKEMYFKQRDRE
NKLRAKRMHEGPKWIPGGALTPQPLGHSHSSRGSRGHSSRDSANSDAAQALKAMMRNPDK
ATDDKAGKEDEEEPEPQDDVKLWEAGWKDRYYRNKFNVGTDDIEFRHNVANHYVRGLCWV
LRYYYQGCPSWKWYFPYHYAPFASDFVNIGDLSNSFEANTEPFKPLEQLMGVFPAGSKEH
LPVTWQRLMTDPESPIIDFYPVDFKIDLNGKKYAWQGVALLPFVDEKRLLSALATVYPDL
TSGERKRNTKGSDRMFVGIRHPVYTFFEGLYEGTMAVEPVDMDPKLTQGLSGKVWCDETA
VMTGGTVMCPVPTLHDTPDNRAIGVHYLDPVYEQGYIYKANVLPGAEMPPRVLKPEDFNK
NKPWKPWVPHIGMSRGGSSNRGARDIDSALRMIRHGTGGGGGHDQRGQWNSGRSDYRSHG
GGGGPPSLLSLGGNGGYGGRGQQRGGYNQGYGEGRGGGQHFDSRSNYSGGGYGNQRSNYG
NQGGNYGNQRGNYGGHGGSYGGGYGNQSDNRRDNRGGGHQQHQPRFYQQNRSRPY
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggagttcctgcattcttccgatggctgagcaggaaatacccttcaataattgtgaat
tgtatcgaacagaaggcaaaagaagttgatggacaaaaggtaccagtcgataccagtcag
ccaaatccaaatgactatgaatttgacaatttataccttgatatgaatgggatcatccat
ccatgctgtcaccctgaagacaagcctgctcctaagaatgaagacgagatgatggtttta
atctttgagtttatagacagaatcttttcaatcgtgcgaccaagaaaagtgttgtacatg
gccattgatggtgtggcaccacgagctaaaatgaaccagcaaaggtcaaggcgattcagg
gcctctaaggaaacggtagagaagaaggaggagatggctgaaatgcgggcccagcttgaa
gccaaaggctgcagtttaccgcctcccaaacccccgggggagcattttgacagtaactgt
atcacaccgggcacaccattcatgttcaaactggccgagtgtctgatctactacatctat
gacagactgaacactgatcctggatggcaaaatatcaagataatcttgtccgacgccaac
agtccaggggagggcgagcacaaaatcatggactacatccgaaaacagagagcccagcca
gaccatgatcccaacaccaagcactgcctgtgtggcgctgacgctgacttaatcatgttg
ggtttagccacacatgaacctcacttcaccatcatcagagaggaattcaaacccaatcag
cccagaccatgtgagctctgtggtcagattggtcatgaaatgaaagaatgtgcaggttta
cctaaagaaaaaactgaaaaaggagatgaggtgaagccctttgttggagaagagcagcag
tacatctttgtgagactgaatatattacgtgaatacctagagcgtgaacttgtcatggaa
aacctctcatttccctacgattttgagagggcattagatgattgggttctcatgtgtttc
ttcgtcggtaatgacttcttacctcacctgccatcactagaaatcagggaaggagcaatt
gaccgacttcaacgtctgtacaaagattgtgtgagaaagaccgggggttacctaacagag
aatggagtattggacctcagccgggtacagttagtgttgtcagaattgggtgaagtagaa
gatgaaatattcaaaagcagaagaagcaaagagatgtacttcaaacaacgagacagagaa
aataagttgagagctaaaagaatgcatgaaggacccaaatggataccaggtggggccctg
acccctcagcctctaggtcactcccattcatcgaggggctcccgagggcacagcagtcgg
gactccgcaaattctgatgcagctcaggctctcaaggccatgatgagaaatccagataag
gccactgatgataaggcagggaaggaggatgaggaagaaccggaacctcaagatgatgtc
aagttgtgggaagctggctggaaggatagatattacagaaacaagttcaatgtaggaact
gatgacatagagttccgacataatgttgcaaatcattatgtgcgagggctctgctgggtt
ttaagatactactatcagggctgtccttcttggaagtggtatttcccgtatcactatgca
ccttttgcgtctgactttgtcaacatcggagacttgtcaaattcatttgaagctaacaca
gaaccattcaaacccttagaacagttgatgggtgtgttccctgctggtagtaaagaacac
ctgcctgtaacctggcaacggttgatgaccgaccctgaatctccaattattgacttctat
cctgttgacttcaagatagatctgaatggaaagaaatatgcctggcaaggtgttgccttg
ctgccatttgtggacgagaagagacttttatcagccctggctactgtgtatcctgatctc
acaagtggagagaggaagaggaataccaaaggtagtgacaggatgtttgttggtattcgc
catcctgtctacacatttttcgagggactgtacgagggcacaatggcagtcgagccagtg
gacatggatcccaaactgacacagggtctttccggcaaagtgtggtgtgatgaaacagct
gttatgactggagggactgttatgtgtccagtgccaacactacatgataccccagacaat
agggccatcggggttcactatttagacccagtatatgaacaaggctacatctacaaggct
aacgtactccccggggcagaaatgcctccccgcgtccttaagccagaggacttcaataaa
aataagccctggaaaccatgggtaccacatatcggaatgtcccgaggtgggtcctcaaat
cgcggggccagagatatagacagtgccctaaggatgatcaggcacggtacaggtggggga
ggtggacatgaccagagaggtcagtggaatagtggcaggtcagactacagatcacatggc
gggggaggaggtccgccatctcttctctcattgggtggaaatggaggatatggaggaaga
ggacaacagagaggaggctacaaccagggatatggtgaaggtcgaggagggggccagcac
ttcgactctcgcagtaactacagtgggggtggctatggtaaccagagaagtaactatgga
aaccaaggaggaaattatggaaatcaaaggggcaactatggtggtcatggaggtagctat
ggaggtggatatggaaatcagagtgacaacaggagggacaatagaggaggtggtcaccaa
cagcatcagccaagattttaccagcagaacagatcccgcccctactag
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