KEGG   Pecten maximus (king scallop): 117324125
Entry
117324125         CDS       T07399                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
pmax  Pecten maximus (king scallop)
Pathway
pmax03020  RNA polymerase
pmax03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmax00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117324125
  09124 Replication and repair
   03420 Nucleotide excision repair
    117324125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pmax03021]
    117324125
   03019 Messenger RNA biogenesis [BR:pmax03019]
    117324125
   03400 DNA repair and recombination proteins [BR:pmax03400]
    117324125
Transcription machinery [BR:pmax03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     117324125
Messenger RNA biogenesis [BR:pmax03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117324125
DNA repair and recombination proteins [BR:pmax03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117324125
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 117324125
NCBI-ProteinID: XP_033735681
LinkDB
Position
3:38547238..38567468
AA seq 172 aa
MFYHVSLEHEILLHPRYFGPNLLNIVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGLIQ
PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPADMEFD
PNSNPPCYKTKDEDVVIQQDDEIRIKIVGTRVDAKDIFAIGTLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttctatcacgtgtctttagagcatgaaattcttctccatccaagatactttggacca
aatctgctgaatatagtcaaacagaagttgttcactgaagtagagggaacttgcacagga
aagtatgggtttgtaatagcagtaaccacaattgacaacattggtgcaggtttgatccag
cccagtcgtggctttgttgtctatcctgtcaaatacaaggccattgtgttcaggcctttc
aaaggggaggtgttggatgctgtcgtcactcaggtcaataaggttggattgtttacagaa
atcggaccactgtcctgctttatatctcgtcattccattccagctgacatggaattcgat
cctaattccaacccaccttgttataagactaaagatgaggatgtggtcatacagcaggat
gatgagatcagaataaagattgttggtacgcgtgtggatgccaaggacatttttgccata
gggacattgatggatgattatttgggactggtgagttaa

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